Data from: Reducing cryptic relatedness in genomic datasets via a central node exclusion algorithm

Fonseca P, Leal T, Santos FC, Gouveia MH, Id-Lahoucine S, Rosse I, Ventura R, Bruneli FA, Machado MA, Peixoto MG, Tarazona-Santos E, Carvalho MR

Date Published: December 7, 2017

DOI: https://doi.org/10.5061/dryad.k8b8n

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Title Gwas_simulations_All_Animals
Downloaded 2 times
Description GWAS simulation results obtained for the full data set (1036 animals). The file contain the folders with the simulations performed using both heritability value (h2=0.2 and h2=0.5). Inside these folders it is possible to find all the GWAS simulations results (for each replicated), a file with all the results merged and the simulated QTLs.
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Title Gwas_simulations_centralityG
Downloaded 3 times
Description GWAS simulation results obtained for the Network G matrix sample (286 animals). The file contain the folders with the simulations performed using both heritability value (h2=0.2 and h2=0.5). Inside these folders it is possible to find all the GWAS simulations results (for each replicated), a file with all the results merged and the simulated QTLs.
Download Gwas_simulations_centralityG.zip (372.0 Mb)
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Title Gwas_simulations_CentralityIBD
Downloaded 1 time
Description GWAS simulation results obtained for the full Network IBD sample (210 animals). The file contain the folders with the simulations performed using both heritability value (h2=0.2 and h2=0.5). Inside these folders it is possible to find all the GWAS simulations results (for each replicated), a file with all the results merged and the simulated QTLs.
Download Gwas_simulations_CentralityIBD.zip (369.1 Mb)
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Title Gwas_simulations_threshold_Gmatrix
Downloaded 1 time
Description GWAS simulation results obtained for the Threshold G matrix (286 animals). The file contain the folders with the simulations performed using both heritability value (h2=0.2 and h2=0.5). Inside these folders it is possible to find all the GWAS simulations results (for each replicated), a file with all the results merged and the simulated QTLs.
Download Gwas_simulations_threshold_Gmatrix.zip (362.4 Mb)
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Title Gwas_simulations_thresholdIBD
Downloaded 1 time
Description GWAS simulation results obtained for the Threshold IBD sample (203 animals). The file contain the folders with the simulations performed using both heritability value (h2=0.2 and h2=0.5). Inside these folders it is possible to find all the GWAS simulations results (for each replicated), a file with all the results merged and the simulated QTLs.
Download Gwas_simulations_thresholdIBD.zip (361.2 Mb)
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Title Tabular_kinship_AllAnimals
Downloaded 2 times
Description This file contains the Kinship values between each pair of individuals present in the All animals sample. Theses kinship values were used in each resampling approach applied in the present study.
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Title Tabular_Gmatrix_All_animals
Description This file contains the G matrix (VanRaden, 2009) values between each pair of individuals present in the All animals sample. Theses kinship values were used in each resampling approach applied in the present study.
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Title Supplementary_file1
Downloaded 5 times
Description This file contains the R script used to perform the threshold resampling applied in this study.
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When using this data, please cite the original publication:

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Additionally, please cite the Dryad data package:

Fonseca P, Leal T, Santos FC, Gouveia MH, Id-Lahoucine S, Rosse I, Ventura R, Bruneli FA, Machado MA, Peixoto MG, Tarazona-Santos E, Carvalho MR (2017) Data from: Reducing cryptic relatedness in genomic datasets via a central node exclusion algorithm. Dryad Digital Repository. https://doi.org/10.5061/dryad.k8b8n
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