Data from: Plumage genes and little else distinguish the genomes of hybridizing warblers

Toews DPL, Taylor SA, Vallender R, Brelsford A, Butcher BG, Messer PW, Lovette IJ

Date Published: August 25, 2016

DOI: http://dx.doi.org/10.5061/dryad.kb610

 

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Title Genotype and Plumage information for NY State Sample Set
Downloaded 42 times
Description The data file shows the individual genotype information for mtDNA and the six divergent loci assayed with an RFLP. Plumage information is also given, the scoring criteria can be found in the supplemental experimental proceedures.
Download Genotypes_phenotypes_NY_2015_samples.csv (15.58 Kb)
Download README.txt (1.965 Kb)
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Title Genotypes from the range wide sample set
Downloaded 14 times
Description Genotypes from mtDNA and the six divergent loci assayed using RFLP for samples collected across the range of both taxa. See "Readme" for NY sample set for additional information.
Download Genotypes_Range_wide_samples.csv (10.24 Kb)
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Title Plumage Scoring Criteria
Downloaded 15 times
Description Adapter from Gill (1980), this table includes the criteria we applied for scoring various plumage characters.
Download plumage_criteria.docx (76.19 Kb)
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Title RFLP Enzyme information
Downloaded 33 times
Description SNP information, primer sequences, cut site information, and product size for the six divergent RFLP loci
Download RFLP Enzyme information.xlsx (33.34 Kb)
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Title Variant Call Format file for ddRAD dataset
Downloaded 39 times
Description 151 Individuals with genotype information generated from the ddRAD protocol, with individuals sampled across the range of both species. In the Readme csv the species name corresponds to the coarse scale phenotype, classified in the hand as either: BWWA - blue-winged warbler; GWWA - golden-winged warbler; BRWA - Brewster's warbler hybrid.
Download GWWA_BWWA.GATK.filtered.removed.minGQ.20....de.vcf (58.16 Mb)
Download README.csv (7.023 Kb)
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Title Variant Call Format file for resequencing dataset
Downloaded 40 times
Description Genotype information for 24 individuals sampled in NY State in 2015 with re-sequencing data. In the readme CSV, the "species" corresponds to the coarse scale phenotype information: BWWA - blue-winged warbler; GWWA - golden-winged warbler; BRWA - Brewster's warbler hybrid; INTR - intermediate hybrid, mostly GWWA characters with additional yellow on the breast.
Download GWWA_BWWA.reseqeuncing.variant.dryad.vcf (6.551 Gb)
Download README.csv (1.204 Kb)
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When using this data, please cite the original publication:

Toews DPL, Taylor SA, Vallender R, Brelsford A, Butcher BG, Messer PW, Lovette IJ (2016) Plumage Genes and Little Else Distinguish the Genomes of Hybridizing Warblers. Current Biology 26(17): 2313-2318. http://dx.doi.org/10.1016/j.cub.2016.06.034

Additionally, please cite the Dryad data package:

Toews DPL, Taylor SA, Vallender R, Brelsford A, Butcher BG, Messer PW, Lovette IJ (2016) Data from: Plumage genes and little else distinguish the genomes of hybridizing warblers. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.kb610
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