Data from: Identification of combinatorial host-specific signatures with a potential to affect host adaptation in influenza A H1N1 and H3N2 subtypes

Khaliq Z, Leijon M, Belák S, Komorowski J

Date Published: August 4, 2016

DOI: http://dx.doi.org/10.5061/dryad.kc097

 

Files in this package

Content in the Dryad Digital Repository is offered "as is." By downloading files, you agree to the Dryad Terms of Service. To the extent possible under law, the authors have waived all copyright and related or neighboring rights to this data. CC0 (opens a new window) Open Data (opens a new window)

Title Separate alignments for each protein of subtypes H1N1 and H3N2 and for humans and avians hosts
Downloaded 1 time
Description Multiple alignments of each protein of both the H1N1 and H3N2 subtypes. A separate file for sequences coming from human and avian hosts is present. All the sequences were obtained from the NCBI database. These were used to create phylogenetic trees (Figure 3 and additional file 5 in the paper)
Download separate_subtypes_separate_hosts_alignmen...cs.zip (1.035 Mb)
Details View File Details
Title Combined alignment for each protein with data from all hosts and subtypes
Description Multiple alignments for all the protein. Each file has sequences coming from both human and avian hosts and both subtypes H1N1 and H3N2. All the sequences were obtained from the NCBI database. They were used to infer phylogenies (Figure 4 and additional file 6 in the paper).
Download combined_subtypes_and_hosts.zip (1.022 Mb)
Details View File Details
Title Separate trees for each host, protein and subtype
Downloaded 1 time
Description Phylogenetic trees in Newick format. For each protein there is a separate tree which has sequences from a single host and a single subtype. The nodes in the tree are marked with the top 5 rules for the respective protein.The nodes of the trees are accession IDs of the sequences used in the creation of the phylogenies followed by the rules numbers that are supported by the sequence. The sequences used were obtained from NCBI database. The trees were created using FastTree 2.1.8.
Download seperate_trees_for_hosts_and_subtypes_mar...es.zip (380.1 Kb)
Details View File Details
Title Combined phylogenetic trees for each protein
Description Phylogenetic trees in Newick format. For each protein there is a tree which has sequences from both the avian and human hosts and from from both H1N1 and H3N2 subtypes. The nodes are the accession IDs of the sequences followed by the host and subtype information. The original sequences were taken from NCBI database. The trees were created using FastTree 2.1.8.
Download combined_trees_for_each_protein.zip (697.3 Kb)
Details View File Details

When using this data, please cite the original publication:

Khaliq Z, Leijon M, Belák S, Komorowski J (2016) Identification of combinatorial host-specific signatures with a potential to affect host adaptation in influenza A H1N1 and H3N2 subtypes. BMC Genomics 17(1): 529. http://dx.doi.org/10.1186/s12864-016-2919-4

Additionally, please cite the Dryad data package:

Khaliq Z, Leijon M, Belák S, Komorowski J (2016) Data from: Identification of combinatorial host-specific signatures with a potential to affect host adaptation in influenza A H1N1 and H3N2 subtypes. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.kc097
Cite | Share
Download the data package citation in the following formats:
   RIS (compatible with EndNote, Reference Manager, ProCite, RefWorks)
   BibTex (compatible with BibDesk, LaTeX)

Search for data

Be part of Dryad

We encourage organizations to: