Data from: An integrative approach to phylogeography: investigating the effects of ancient seaways, climate, and historical geology on multi-locus phylogeographic boundaries of the arboreal salamander (Aneides lugubris)

Reilly SB, Corl A, Wake DB

Date Published: November 2, 2015

DOI: http://dx.doi.org/10.5061/dryad.kg4mq

 

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Title A.lugubris_STRUCTURE_input
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Description STRUCTURE input file
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Title A.lugubris_BEAST_mtDNA_combined
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Description BEAST tree
Download A.lugubris_BEAST_mtDNA_combined.tre (90.69 Kb)
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Title A.lugubris_ND4+cytb
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Description Alignment of mtDNA genes (ND4+cytb)
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Title A.lugubris_CXCR4_unphased
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Description CXCR4 alignment
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Title A.lugubris_KIAA2013_unphased
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Description KIAA2013 alignment
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Title A.lugubris_RAG2_unphased
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Description RAG2 alignment
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Title A.lugubris_SVEP1_unphased
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Description SVEP1 alignment
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Title A.lugubris_ZEB1_unphased
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Description ZEB1 alignment
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Title A.lugubris_StarBEAST_4gene
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Description StarBEAST tree utilizing the ND4, cytb, CXCR4, and KIAA2013 genes
Download A.lugubris_StarBEAST_4gene.tre (20.13 Kb)
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Title A.lugubris_StarBEAST_5gene
Downloaded 4 times
Description StarBEAST tree utilizing the nuclear genes CXCR4, KIAA2013, RAG2, SVEP1, and ZEB1
Download A.lugubris_StarBEAST_5gene.tre (19.53 Kb)
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Title A.lugubris_StarBEAST_7gene
Downloaded 4 times
Description StarBEAST tree utilizing the mitochondrial ND4 and cytb genes, and the nuclear genes CXCR4, KIAA2013, RAG2, SVEP1, and ZEB1
Download A.lugubris_StarBEAST_7gene.tre (18.42 Kb)
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When using this data, please cite the original publication:

Reilly SB, Corl A, Wake DB (2015) An integrative approach to phylogeography: investigating the effects of ancient seaways, climate, and historical geology on multi-locus phylogeographic boundaries of the arboreal salamander (Aneides lugubris). BMC Evolutionary Biology 15:241. http://dx.doi.org/10.1186/s12862-015-0524-9

Additionally, please cite the Dryad data package:

Reilly SB, Corl A, Wake DB (2015) Data from: An integrative approach to phylogeography: investigating the effects of ancient seaways, climate, and historical geology on multi-locus phylogeographic boundaries of the arboreal salamander (Aneides lugubris). Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.kg4mq
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