Data from: aTRAM - automated Target Restricted Assembly Method: a fast method for assembling loci across divergent taxa from next-generation sequencing data

Allen JM, Huang DI, Cronk QC, Johnson KP

Date Published: April 1, 2015

DOI: http://dx.doi.org/10.5061/dryad.kh886

 

Files in this package

Content in the Dryad Digital Repository is offered "as is." By downloading files, you agree to the Dryad Terms of Service. To the extent possible under law, the authors have waived all copyright and related or neighboring rights to this data. CC0 (opens a new window) Open Data (opens a new window)

Title Alignments from Pediculus schaeffi assemblies
Downloaded 29 times
Description This zip file contains folders with alignments from the assembly of Pediculus schaeffi genes using aTRAM, reference-based and de novo approaches. The alignments include each of these assemblies compared with the reference species Pediculus humanus as well as to each of the other assembly methods.
Download DRYAD_PedSchaeffi_Data.zip (128.9 Mb)
Details View File Details
Title Alignments from aTRAM assemblies across taxa
Downloaded 28 times
Description Alignments of 1,107 aTRAM gene assemblies from six taxa. Each gene and each taxon is aligned to the reference sequence of Pediculus humanus.
Download DRYAD_AllTaxon_Alignments.zip (15.60 Mb)
Details View File Details

When using this data, please cite the original publication:

Allen JM, Huang DI, Cronk QC, Johnson KP (2015) aTRAM - automated Target Restricted Assembly Method: a fast method for assembling loci across divergent taxa from next-generation sequencing data. BMC Bioinformatics 16:98. http://dx.doi.org/10.1186/s12859-015-0515-2

Additionally, please cite the Dryad data package:

Allen JM, Huang DI, Cronk QC, Johnson KP (2015) Data from: aTRAM - automated Target Restricted Assembly Method: a fast method for assembling loci across divergent taxa from next-generation sequencing data. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.kh886
Cite | Share
Download the data package citation in the following formats:
   RIS (compatible with EndNote, Reference Manager, ProCite, RefWorks)
   BibTex (compatible with BibDesk, LaTeX)

Search for data

Be part of Dryad

We encourage organizations to: