Data from: A genomic approach for distinguishing between recent and ancient admixture as applied to cattle

McTavish EJ, Hillis DM

Date Published: January 6, 2014

DOI: http://dx.doi.org/10.5061/dryad.kn087

 

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Title 50K cattle SNP data
Description This folder contains 50k cattle SNP data in the format:[SNPNUMBER, INDIVDUAL ID, GENOTYPE], where: SNPnumber is described in ibmc_markers041709.csv; InidvdualID is described in the file all_ind_info.csv; Genotype is in form 1= homozygous for A, 2=homozygous for B, 3= heterozygous, 10 missing data; Indivduals are separated into files by their Breed Code, as described in breedcodes.csv, and in all_ind_info.csv. Xheterozygosity.csv lists number of heterozygotes at X loci, used to differentiate males and females. The 1369 indivduals listed in Xheterozygosity.csv are the indivduals retained in anayses after filtering. autosomal_snp.csv lists all automsal snp loci retained after filtering. X_snp.csv lists all snps retained on the X chromosome after removing pseudo-autosomal region and filtering. For further information please contact Emily Jane McTavish ejmctavish@utexas.edu
Download RawData_JHered.zip (181.3 Mb)
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When using this data, please cite the original publication:

McTavish EJ, Hillis DM (2014) A genomic approach for distinguishing between recent and ancient admixture as applied to cattle. Journal of Heredity 105(4): 445-456. http://dx.doi.org/10.1093/jhered/esu001

Additionally, please cite the Dryad data package:

McTavish EJ, Hillis DM (2014) Data from: A genomic approach for distinguishing between recent and ancient admixture as applied to cattle. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.kn087
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