Data from: Comparing species tree estimation with large anchored phylogenomic and small Sanger-sequenced molecular datasets: an empirical study on Malagasy pseudoxyrhophiine snakes

Ruane S, Raxworthy CJ, Lemmon AR, Moriarty Lemmon E, Burbrink FT

Date Published: October 12, 2015

DOI: http://dx.doi.org/10.5061/dryad.kp400

 

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Title Anchored loci probe design information
Downloaded 16 times
Description The alignments of probe regions, probes, and probe region coordinates used to generate the anchored loci for the pseudoxyrhophiine dataset, as described in the methods of the manuscript.
Download AHE_Snake_ProbeDesign.zip (1.058 Mb)
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Title Datasets used for analyses
Downloaded 29 times
Description This zip files contains the Sanger and NGS alignments, information for the Robinson-Foulds distances for all trees, the gene trees for both the Sanger and NGS alignments, resulting trees from phylogenetic analyses, and the complete MetaTree analysis data.
Download All_files_for_Pseudoxyrhophiines.zip (141.8 Mb)
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When using this data, please cite the original publication:

Ruane S, Raxworthy CJ, Lemmon AR, Moriarty Lemmon E, Burbrink FT (2015) Comparing species tree estimation with large anchored phylogenomic and small Sanger-sequenced molecular datasets: an empirical study on Malagasy pseudoxyrhophiine snakes. BMC Evolutionary Biology 15: 221. http://dx.doi.org/10.1186/s12862-015-0503-1

Additionally, please cite the Dryad data package:

Ruane S, Raxworthy CJ, Lemmon AR, Moriarty Lemmon E, Burbrink FT (2015) Data from: Comparing species tree estimation with large anchored phylogenomic and small Sanger-sequenced molecular datasets: an empirical study on Malagasy pseudoxyrhophiine snakes. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.kp400
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