Data from: Diagnostic SNPs reveal widespread introgressive hybridization between introduced bighead and silver carp in the Mississippi River Basin

Lamer JT, Ruebush BC, Arbieva ZH, McClelland MA, Epifanio JM, Sass GG

Date Published: June 22, 2015

DOI: http://dx.doi.org/10.5061/dryad.kp6j2

 

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Title Asian carp nuclear and mitochodrial SNP genotypes MOE
Downloaded 20 times
Description A unique code for each individual is given in the first column and each location sampled is represented by a four character acronym described in the manuscript. The top 2 rows are bighead carp and silver carp species-specific SNPs that correspond to each locus (row 3). Column two is the mitochondrial COII locus followed by 57 nuclear SNP loci.
Download Asian carp nuclear and mitochodrial SNP ge....xlsx (2.500 Mb)
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Title Bighead and Silver carp parents mtDNA (COII) sequences
Downloaded 9 times
Description Each entry is in fasta format and starts with a four character location code, a unique number identifier for each individual, and a four letter code representing bighead carp (BHCP) or silver carp (SVCP) as resolved at 57 nuclear SNP loci. These are trimmed sequences representing the parents used for SNP discovery.
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Title SNP genotypes plus field and lab data on each fish
Downloaded 16 times
Description A unique code for each individual is given in the first column and each location sampled is represented by a four character acronym described in the manuscript. The top 2 rows are bighead carp and silver carp species-specific SNPs that correspond to each locus (row 3). Column ten is the mitochondrial COII locus followed by 57 nuclear SNP loci. Following each unique individual code, starting in column 2 and ending in column 9, is the river reach of capture, river of capture, 57 locus genetic identification based on manual and NewHybrids assignment, morphological field identification, total length (mm), total weight (g), age as determined by postcleithra annuli counts, and birth year determined by subtracting the age from the year of capture.
Download Asian carp nuclear and mitochodrial SNP ge....xlsx (2.440 Mb)
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When using this data, please cite the original publication:

Lamer JT, Ruebush BC, Arbieva ZH, McClelland MA, Epifanio JM, Sass GG (2015) Diagnostic SNPs reveal widespread introgressive hybridization between introduced bighead and silver carp in the Mississippi River Basin. Molecular Ecology 24(15): 3931–3943. http://dx.doi.org/10.1111/mec.13285

Additionally, please cite the Dryad data package:

Lamer JT, Ruebush BC, Arbieva ZH, McClelland MA, Epifanio JM, Sass GG (2015) Data from: Diagnostic SNPs reveal widespread introgressive hybridization between introduced bighead and silver carp in the Mississippi River Basin. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.kp6j2
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