Data from: Cryptic speciation in the field vole: a multilocus approach confirms three highly divergent lineages in Eurasia

 

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Title Sample_data
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Description New sequence data and sequence data retrieved from GenBank for all loci analysed. Details on sampling locality are given for each specimen analysed. Haplotype names as well as GenBank accession numbers are detailed for each loci per specimen, as well as source of previously published data. Information on where samples are held in is also displayed.
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Title BRCA1_genotype_alignment
Downloaded 36 times
Description Alignment of BRCA1 genotypes of all individuals used for species tree inference. This data set corresponds to the largest non-recombining blocks obtained with software IMgc (Woener et al. 2007). Two sequences are given per individual.
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Title BRCA1_haplotype_alignment
Downloaded 26 times
Description Alignment of BRCA1 haplotypes inferred by Phase version 2.1 (Stephens et al. 2001; Stephens & Donnelly 2003). Dataset used for gene tree inference.
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Title DBX5_genotype_alignment
Downloaded 27 times
Description Alignment of DBX5 genotypes of all individuals used for species tree inference.
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Title DBX5_haplotype_alignment
Downloaded 25 times
Description Alignment of DBX5 haplotypes inferred by Phase version 2.1 (Stephens et al. 2001; Stephens & Donnelly 2003) and used for gene tree inference.
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Title CYTB_haplotype_alignment
Downloaded 30 times
Description Alignment of cytochrome b haplotypes used for gene tree inference.
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Title DBX6_genotype_alignment
Downloaded 24 times
Description Alignment of DBX6 genotypes of all individuals used for species tree inference.
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Title DBX6_haplotype_alignment
Downloaded 21 times
Description Alignment of DBX6 haplotypes inferred by Phase version 2.1 (Stephens et al. 2001; Stephens & Donnelly 2003) and used for gene tree inference.
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Title DBY7_genotype_alignment
Downloaded 22 times
Description Alignment of DBY7 sequences of all individuals used for species tree inference.
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Title DBY7_haplotype_alignment
Downloaded 22 times
Description Alignment of DBY7 haplotypes used for gene tree inference.
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Title RAG1_genotype_alignment
Downloaded 20 times
Description Alignment of RAG1 genotypes of all individuals used for species tree inference. This data set corresponds to the largest non-recombining blocks obtained with software IMgc (Woener et al. 2007). Two sequences are given per individual.
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Title RAG1_haplotype_alignment
Downloaded 21 times
Description Alignment of RAG1 haplotypes inferred by Phase version 2.1 (Stephens et al. 2001; Stephens & Donnelly 2003). Dataset used for gene tree inference.
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Title SMCY7_genotype_alignment
Downloaded 21 times
Description Alignment of SMCY7 sequences of all individuals used for species tree inference.
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Title SMCY7_haplotype_alignment
Downloaded 23 times
Description Alignment of SMCY7 haplotypes used for gene tree inference.
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Title CYTB_genotype_alignment
Downloaded 43 times
Description Alignment of cytochrome b sequences of all individuals used for species tree inference.
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When using this data, please cite the original publication:

Paupério J, Herman JS, Melo-Ferreira J, Jaarola M, Alves PC, Searle JB (2012) Cryptic speciation in the field vole: a multilocus approach confirms three highly divergent lineages in Eurasia. Molecular Ecology 21(24): 6015–6032. http://dx.doi.org/10.1111/mec.12024

Additionally, please cite the Dryad data package:

Paupério J, Herman JS, Melo-Ferreira J, Jaarola M, Alves PC, Searle JB (2012) Data from: Cryptic speciation in the field vole: a multilocus approach confirms three highly divergent lineages in Eurasia. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.kp79t
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