Data from: Ancestral population reconstitution from isofemale lines as a tool for experimental evolution

Nouhaud P, Tobler R, Nolte V, Schlötterer C

Date Published: September 2, 2016

DOI: http://dx.doi.org/10.5061/dryad.ks01r

 

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Title Dmel_AP1-AP2-RAP1-RAP2_bwa.sync
Downloaded 3 times
Description Drosophila melanogaster SNP data. Reads were mapped using bwa. Populations were sequenced as a single sample (e.g Pool-Seq). Their order in the sync file is as follows: AP1-AP2-RAP1-RAP2. The sync file only contains high-quality SNPs with downsampled allele counts (see main publication for additional information).
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Title Dmel_AP1-AP2-RAP1-RAP2_novoalign.sync
Downloaded 3 times
Description Drosophila melanogaster SNP data. Reads were mapped using novoalign. Populations were sequenced as a single sample (e.g Pool-Seq). Their order in the sync file is as follows: AP1-AP2-RAP1-RAP2. The sync file only contains high-quality SNPs with downsampled allele counts (see main publication for additional information).
Download Dmel_AP1-AP2-RAP1-RAP2_novoalign.sync (24.37 Mb)
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Title Dsim_AP1-AP2-RAP1-RAP2_bwa.sync
Downloaded 3 times
Description Drosophila simulans SNP data. Reads were mapped using bwa. Populations were sequenced as a single sample (e.g Pool-Seq). Their order in the sync file is as follows: AP1-AP2-RAP1-RAP2. The sync file only contains high-quality SNPs with downsampled allele counts (see main publication for additional information).
Download Dsim_AP1-AP2-RAP1-RAP2_bwa.sync (57.12 Mb)
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Title Dsim_AP1-AP2-RAP1-RAP2_novoalign.sync
Downloaded 3 times
Description Drosophila simulans SNP data. Reads were mapped using novoalign. Populations were sequenced as a single sample (e.g Pool-Seq). Their order in the sync file is as follows: AP1-AP2-RAP1-RAP2. The sync file only contains high-quality SNPs with downsampled allele counts (see main publication for additional information).
Download Dsim_AP1-AP2-RAP1-RAP2_novoalign.sync (57.13 Mb)
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Title drift_expectations_pool-sampling_mated_females.R
Downloaded 8 times
Description R script simulating genetic drift in isofemale lines.
Download drift_expectations_pool-sampling_mated_females.R (8.316 Kb)
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When using this data, please cite the original publication:

Nouhaud P, Tobler R, Nolte V, Schlötterer C (2016) Ancestral population reconstitution from isofemale lines as a tool for experimental evolution. Ecology and Evolution 6(20): 7169-7175. http://dx.doi.org/10.1002/ece3.2402

Additionally, please cite the Dryad data package:

Nouhaud P, Tobler R, Nolte V, Schlötterer C (2016) Data from: Ancestral population reconstitution from isofemale lines as a tool for experimental evolution. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.ks01r
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