Data from: Whole genome sequencing of two North American Drosophila melanogaster populations reveals genetic differentiation and positive selection

Campo D, Lehmann K, Fjeldsted C, Souaiaia T, Kao J, Nuzhdin SV

Date Published: July 25, 2013

DOI: http://dx.doi.org/10.5061/dryad.kt062

 

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Title COI sequences alignment
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Description Alignment of mt COI sequences from inbred Drosophila melanogaster genotypes from Raleigh, Winters, and some locations from the South East US and Caribbean. Please refer to the manuscript for more information.
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Title Obst-F sequences alignment
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Description Alignment of Obst-F gene sequences from inbred Drosophila melanogaster genotypes from Raleigh, Winters, and some locations from the South East US and Caribbean. Please refer to the manuscript for more information.
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Title SNP data for Raleigh/Winters genotypes
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Description SNP calls for the Raleigh and the Winters genotypes mentioned in the paper. They are in the vcf format, and were generated using the GATK software.
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Title SNP data for Raleigh/Winters genotypes
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Description SNP calls for the Raleigh and the Winters genotypes mentioned in the paper. They are in the vcf format, and were generated using the GATK software.
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Title SNP data for Raleigh/Winters genotypes
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Description SNP calls for the Raleigh and the Winters genotypes mentioned in the paper. They are in the vcf format, and were generated using the GATK software.
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Title SNP data for Raleigh/Winters genotypes
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Description SNP calls for the Raleigh and the Winters genotypes mentioned in the paper. They are in the vcf format, and were generated using the GATK software.
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Title SNP data for Raleigh/Winters genotypes
Downloaded 6 times
Description SNP calls for the Raleigh and the Winters genotypes mentioned in the paper. They are in the vcf format, and were generated using the GATK software.
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Title SNP data for Raleigh/Winters genotypes
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Description SNP calls for the Raleigh and the Winters genotypes mentioned in the paper. They are in the vcf format, and were generated using the GATK software.
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Title SNP data for Raleigh/Winters genotypes
Downloaded 8 times
Description SNP calls for the Raleigh and the Winters genotypes mentioned in the paper. They are in the vcf format, and were generated using the GATK software.
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Title SNP data for Raleigh/Winters genotypes
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Description SNP calls for the Raleigh and the Winters genotypes mentioned in the paper. They are in the vcf format, and were generated using the GATK software.
Download xah.tar (906.1 Mb)
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Title SNP data for Raleigh/Winters genotypes
Downloaded 5 times
Description SNP calls for the Raleigh and the Winters genotypes mentioned in the paper. They are in the vcf format, and were generated using the GATK software.
Download xai.tar (929.5 Mb)
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Title SNP data for Raleigh/Winters genotypes
Downloaded 10 times
Description SNP calls for the Raleigh and the Winters genotypes mentioned in the paper. They are in the vcf format, and were generated using the GATK software.
Download xaj.tar (914.4 Mb)
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Title SNP data for Raleigh/Winters genotypes
Downloaded 6 times
Description SNP calls for the Raleigh and the Winters genotypes mentioned in the paper. They are in the vcf format, and were generated using the GATK software.
Download xak.tar (842.3 Mb)
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Title SNP data for Raleigh/Winters genotypes
Downloaded 7 times
Description SNP calls for the Raleigh and the Winters genotypes mentioned in the paper. They are in the vcf format, and were generated using the GATK software.
Download xal.tar (838.7 Mb)
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Title SNP data for Raleigh/Winters genotypes
Downloaded 7 times
Description SNP calls for the Raleigh and the Winters genotypes mentioned in the paper. They are in the vcf format, and were generated using the GATK software.
Download xam.tar (913.2 Mb)
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Title SNP data for Raleigh/Winters genotypes
Downloaded 12 times
Description SNP calls for the Raleigh and the Winters genotypes mentioned in the paper. They are in the vcf format, and were generated using the GATK software.
Download xan.tar (522.4 Mb)
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When using this data, please cite the original publication:

Campo D, Lehmann K, Fjeldsted C, Souaiaia T, Kao J, Nuzhdin SV (2013) Whole genome sequencing of two North American Drosophila melanogaster populations reveals genetic differentiation and positive selection. Molecular Ecology 22(20): 5084-5097. http://dx.doi.org/10.1111/mec.12468

Additionally, please cite the Dryad data package:

Campo D, Lehmann K, Fjeldsted C, Souaiaia T, Kao J, Nuzhdin SV (2013) Data from: Whole genome sequencing of two North American Drosophila melanogaster populations reveals genetic differentiation and positive selection. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.kt062
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