Data from: Ancient onset of geographic divergence, interpopulation genetic exchange, and natural selection on the Mc1r coat-color gene in the house mouse (Mus musculus) inferred from tandemly arranged nuclear gene markers

Kodama S, Nunome M, Suzuki H, Moriwaki K

Date Published: January 20, 2015

DOI: http://dx.doi.org/10.5061/dryad.kt0s8

 

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Title 1_Fig3_concatenated_Kodama.nex
Downloaded 4 times
Description Concatenated sequences of the seven nuclear genes used for the building the Neighbor Net network shown in Fig. 3A (Kodama et al., 2015).
Download 1_Fig3_concatenated_Kodama.nex.txt (601.8 Kb)
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Title 2_Fanca
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Description The Fanca sequence data used for the construction of the Neighbor Net network shown in Fig. 2A (Kodama et al., 2015).
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Title 3_Spire2
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Description The Spire2 sequence data used for the construction of the Neighbor Net network shown in Fig. 2A (Kodama et al., 2015).
Download 3_Spire2.nex (103.3 Kb)
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Title 4_Tcf25
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Description The Tcf25 sequence data used for the construction of the Neighbor Net network shown in Fig. 2A (Kodama et al., 2015).
Download 4_Tcf25.nex (120.7 Kb)
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Title 5_Mc1r_409bp
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Description The Mc1r sequence (409 bp) data used for the construction of the Neighbor Net network shown in Fig. 2A (Kodama et al., 2015).
Download 5_Mc1r_409bp.nex (93.56 Kb)
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Title 6_Def8
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Description The Def8 sequence data used for the construction of the Neighbor Net network shown in Fig. 2A (Kodama et al., 2015).
Download 6_Def8.nex (89.40 Kb)
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Title 7_Afg3l1_all
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Description The Afg3lI sequence data used for the construction of the Neighbor Net network shown in Fig. 2A (Kodama et al., 2015).
Download 7_Afg3l1_all.nex (107.9 Kb)
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Title 8_Dbndd1
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Description The Dbndd1 sequence data used for the construction of the Neighbor Net network shown in Fig. 2A (Kodama et al., 2015).
Download 8_Dbndd1.nex (114.6 Kb)
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Title 9_Mc1r948bp_Arlequin
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Description The Mc1r sequence (948 bp) data used for population genetic analyses using Arlequin ver 3.5 (Kodama et al., 2015).
Download 9_Mc1r948bp_Arlequin.txt (79.25 Kb)
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Title 11_BEAST_input_Kodama
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Description Concatenated sequences of the seven nuclear genes used for the BEAST analysis shown in Fig. 4 (Kodama et al., 2015).
Download 11_BEAST_input_Kodama.nex (203.3 Kb)
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Title 12_STRUCTURE_Kodama
Downloaded 2 times
Description Concatenated sequence data used for assessment of population genetic structure using the dataset of the seven nuclear genes from 98 Mus musculus and the software STRUCTURE, version 2.3 (Fig. 3B, Kodama et al., 2015).
Download 12_STRUCTURE_Kodama.txt (88.31 Kb)
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Title 10_Mc1r_upstream_Noncoding
Downloaded 4 times
Description The non-coding region immediately upstream of the Mc1r exon 1 region. The data were used for construction of the median joining network shown in Fig 5A (Kodama et al., 2015).
Download 10_Mc1r_upstream_Noncoding.nex (63.06 Kb)
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When using this data, please cite the original publication:

Kodama S, Nunome M, Moriwaki K, Suzuki H (2015) Ancient onset of geographic divergence, interpopulation genetic exchange, and natural selection on the Mc1r coat-color gene in the house mouse (Mus musculus) inferred from tandemly arranged nuclear gene markers. Biological Journal of the Linnean Society 114(4): 778-794. http://dx.doi.org/10.1111/bij.12471

Additionally, please cite the Dryad data package:

Kodama S, Nunome M, Suzuki H, Moriwaki K (2015) Data from: Ancient onset of geographic divergence, interpopulation genetic exchange, and natural selection on the Mc1r coat-color gene in the house mouse (Mus musculus) inferred from tandemly arranged nuclear gene markers. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.kt0s8
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