Data from: Extreme QTL mapping of germination speed in Arabidopsis thaliana

Yuan W, Flowers JM, Sahraie DJ, Ehrenreich IM, Purugganan MD

Date Published: July 25, 2016

DOI: http://dx.doi.org/10.5061/dryad.kt5nq

 

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Content in the Dryad Digital Repository is offered "as is." By downloading files, you agree to the Dryad Terms of Service. To the extent possible under law, the authors have waived all copyright and related or neighboring rights to this data. CC0 (opens a new window) Open Data (opens a new window)

Title Cumulative_germination_count_of_natural_accessions
Downloaded 1 time
Description This file provides triplicate raw data of cumulative germination counts in 18 accessions phenotyped for their germination speed. Tab 1 shows germination counts of the two parental accessions (Bs-2 and Col-0), and Tab 2 shows germination counts of a worldwide collection of 16 accessions.
Download Dryad1_Cumulative_germination_counts_acces....xlsx (38.72 Kb)
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Title Athaliana_Isothermal_Array_Probe_Sequence
Downloaded 7 times
Description All custom-designed probes featured on the A.thaliana Isothermal SNP array. The array was manufactured by Agilent Biotech in CGH 8*60K format. The mean Tm value of the probes is 55 degree Celsius. The nomenclature of the probes follows the "Allele source_Chromosome_Position" format. The two alternatives of the allele source are "C" stands for Col-0 allele, and "NC" stands for non-Col-0 allele. The position information of the probes follows TAIR 8 coordinate.
Download Dryad2_Athaliana_Isothermal_Array_Probe_Se....xlsx (1.903 Mb)
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Title TimeSeries_GerminationCohort_ArrayGenotype
Downloaded 2 times
Description Raw microarray genotyping data derived by the Agilent feature extraction software, with built-in rank invariant normalization. Data from the manufacturer-supplied quality-control probes are not included. Cohorts (early, medium, late, and all germinants) are genotyped in two biologcal replicates (rep1 and rep2), and with dye-swap hybridization replicates (Cy3 and Cy5).
Download TimeSeries_GerminationCohort_ArrayGenotype.zip (75.06 Mb)
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When using this data, please cite the original publication:

Yuan W, Flowers JM, Sahraie DJ, Ehrenreich IM, Purugganan MD (2016) Extreme QTL mapping of germination speed in Arabidopsis thaliana. Molecular Ecology 25(17): 4177-4196. http://dx.doi.org/10.1111/mec.13768

Additionally, please cite the Dryad data package:

Yuan W, Flowers JM, Sahraie DJ, Ehrenreich IM, Purugganan MD (2016) Data from: Extreme QTL mapping of germination speed in Arabidopsis thaliana. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.kt5nq
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