Data from: Are Miquihuana rhadiniformis Barr, 1982 and Pseudamara arenaria (LeConte, 1847) (Coleoptera, Carabidae) sphodrines? Phylogenetic analysis of data from next-generation sequencing of museum specimens resolves the tribal-group relationships of these enigmatic taxa

Gomez RA, Will KW, Maddison DR

Date Published: October 19, 2016

DOI: http://dx.doi.org/10.5061/dryad.kv898

 

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Title Pseudamara and Miquihuana sequence data matrix with ML and bootstrap trees
Downloaded 7 times
Description This file contains all trimmed and aligned DNA sequence data analyzed for the paper as well as maximum likelihood bootstrap trees and maximum likelihood trees. It is formatted as a NEXUS file, and is compatible with Mesquite version 3.10
Download Pseudamara_Miquihuana_trimmed_5gene_FULLMATRIX.nex (1.206 Mb)
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Title Pseudamara Miquihuana untrimmed DNA sequence matrix
Downloaded 7 times
Description This file contains all of the untrimmed DNA sequence data gathered for the paper. It is formatted as a NEXUS file, and is compatible with Mesquite version 3.10
Download Pseudamara_Miquihuana_UNtrimmed_5gene.nex (389.1 Kb)
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Title Miquihuana rhadiniformis kww999 CLC de novo assembly
Downloaded 5 times
Description This assembly was built using CLC Genomics Workbench v. 8.5.1 and the default de novo assembly options after using CLC's default trimming of the input reads. The input data consisted of 100-base paired-end Illumina HiSeq 2000 reads and were imported into CLC as paired-end reads. The raw reads are accessible through the NCBI Sequence Read Archive with the accession number SRP073745.
Download Miquihuana_rhadiniformis_kww999_clc_assembly.fasta (40.98 Mb)
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Title Pseudamara arenaria kww998 CLC de novo assembly
Downloaded 6 times
Description This assembly was built using CLC Genomics Workbench v. 8.5.1 and the default de novo assembly options after using CLC's default trimming of the input reads. The input data consisted of 150-base paired-end Illumina HiSeq 3000 reads and were imported into CLC as paired-end reads. The raw reads are accessible through the NCBI Sequence Read Archive with the accession number SRP073745.
Download Pseudamara_arenaria_kww998_CLC_assembly.fasta (252.4 Mb)
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When using this data, please cite the original publication:

Gomez RA, Will KW, Maddison DR (2016) Are Miquihuana rhadiniformis Barr, 1982 and Pseudamara arenaria (LeConte, 1847) (Coleoptera, Carabidae) sphodrines? Phylogenetic analysis of data from next-generation sequencing of museum specimens resolves the tribal-group relationships of these enigmatic taxa. Entomologische Blätter und Coleoptera 112(1): 149-168.

Additionally, please cite the Dryad data package:

Gomez RA, Will KW, Maddison DR. Data from: Are Miquihuana rhadiniformis Barr, 1982 and Pseudamara arenaria (LeConte, 1847) (Coleoptera, Carabidae) sphodrines? Phylogenetic analysis of data from next-generation sequencing of museum specimens resolves the tribal-group relationships of these enigmatic taxa. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.kv898
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