Data from: Genome-wide analysis of colonization history and concomitant selection in Arabidopsis lyrata

Mattila TM, Tyrmi J, Pyhäjärvi T, Savolainen O

Date Published: July 13, 2017

DOI: http://dx.doi.org/10.5061/dryad.m1v40

 

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Title STAPLER_pipeline
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Description A zip archive containing input file for STAPLER pipeline tool
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Title Data processing pipeline
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Description A zip archive containing pipeline scripts for mapping data processing
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Title Stairwayplot_pipelines
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Description A zip archive containing files for Stairwayplot analysis
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Title ANGSD_pipelines
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Description A zip archive containing pipelines for population genetics analyses with ANGSD
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Title fastsimcoal2_models
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Description A zip archive containing fastsimcoal2 model and prior specification files
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Title admixture_pipeline_REVISION
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Description A file containing commands to run ADMIXTURE analysis
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Title NGSadmix pipeline
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Description A file containing commands for NGSadmix analysis
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Title THIN_table_2
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Description A script for thinning ANGSD genotype output
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Title angsd2fsc_multipop_04
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Description A script for generating grid script to run multiple instances of fatsimcoal2 simultaneously from ANGSD input SFS
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Title correct_sfs
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Description A script for correcting SFS using the method described in the original paper
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Title README
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Description a README file
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When using this data, please cite the original publication:

Mattila TM, Tyrmi J, Pyhäjärvi T, Savolainen O (2017) Genome-wide analysis of colonization history and concomitant selection in Arabidopsis lyrata. Molecular Biology and Evolution, online in advance of print. http://dx.doi.org/10.1093/molbev/msx193

Additionally, please cite the Dryad data package:

Mattila TM, Tyrmi J, Pyhäjärvi T, Savolainen O (2017) Data from: Genome-wide analysis of colonization history and concomitant selection in Arabidopsis lyrata. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.m1v40
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