Data from: Genome-wide association genetics of an adaptive trait in lodgepole pine

Parchman TL, Gompert Z, Benkman CW, Schilkey FD, Mudge J, Buerkle CA

Date Published: January 25, 2012

DOI: http://dx.doi.org/10.5061/dryad.m2271pf1

 

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Title rfseq_protocol
Downloaded 704 times
Description This is a protocol for enzymatically guided genomic reduction and highly multiplexed Illumina library preparation.
Download rfseq_protocol.pdf (111.7 Kb)
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Title c_code_bass
Downloaded 111 times
Description C code for bayesian association mapping
Download code_bass.tgz (6.679 Kb)
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Title P_contorta_assembly.bam
Downloaded 2114 times
Description Assembly in BAM format. This assembly was created by using an artificial reference created through a denovo assembly. This artificial reference was then used a template onto which we assembled the remaining Illumina reads.
Download REFpine27apr11-0.bam (509.2 Mb)
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Title pine_ref
Downloaded 104 times
Description This artificial reference consists of contig consensus sequences created with a de novo assembly of a subset of reads, joined by stretches of 30 Ns. This was then used in a template guided assembly, where all Illumina reads were assembled onto the reference.
Download pine_ref.fasta (17.58 Mb)
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When using this data, please cite the original publication:

Parchman TL, Gompert Z, Mudge J, Schilkey FD, Benkman CW, Buerkle CA (2012) Genome-wide association genetics of an adaptive trait in lodgepole pine. Molecular Ecology 21(12): 2991–3005. http://dx.doi.org/10.1111/j.1365-294X.2012.05513.x

Additionally, please cite the Dryad data package:

Parchman TL, Gompert Z, Benkman CW, Schilkey FD, Mudge J, Buerkle CA (2012) Data from: Genome-wide association genetics of an adaptive trait in lodgepole pine. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.m2271pf1
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