Data from: Origins of the 2009 H1N1 influenza pandemic in swine in Mexico

Mena I, Nelson MI, Quezada-Monroy F, Dutta J, Cortes-Fernández R, Lara-Puente JH, Castro-Peralta F, Cunha LF, Sequeira-Trovão N, Lozano-Dubernard B, Rambaut A, van Bakel H, García-Sastre A

Date Published: July 1, 2016

DOI: http://dx.doi.org/10.5061/dryad.m550m

 

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Title XML files. Datasets for swine influenza phylogenetic analysis
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Description Datasets containing sets of sequences used for the phylogenetic analysis of the different genomic segments of swine influenza
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Title Supplementary Data file 1
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Description acknowledgement of the authors and research laboratories that contributed sequence data
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Title Supplementary Data file 2
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Description acknowledgement of the authors and research laboratories that contributed sequence data
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Title Supplementary data file 3
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Description 2009 pandemic H1N1 genome sequences used in the analysis
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Title genebank acc numbers
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Description accession numbers of the 58 new genomes of swine influenza from Mexico analyzed in this study
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Title Figure 1 - source data 1
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Description source data used in figure 1 of the manuscript
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Title Figure 2 - figure supplement 1
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Description Characteristics of the 58 swIAVs collected in Mexico for this study.
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Title Figure 6 - source data 1
Description Pairwise information on imports of live swine from specific countries is available from 1996-2012. Data available from the United Nations' Commodity Trade Statistics Database, http://comtrade.un.org.
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Title Figure 7- source data 1
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Description Times to the most recent common ancestor (tMRCA) and posterior probabilities (>0.01) used in figure 7
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When using this data, please cite the original publication:

Mena I, Nelson MI, Quezada-Monroy F, Dutta J, Cortes-Fernández R, Lara-Puente JH, Castro-Peralta F, Cunha LF, Sequeira-Trovão N, Lozano-Dubernard B, Rambaut A, van Bakel H, García-Sastre A (2016) Origins of the 2009 H1N1 influenza pandemic in swine in Mexico. eLife 5: e16777. http://dx.doi.org/10.7554/eLife.16777

Additionally, please cite the Dryad data package:

Mena I, Nelson MI, Quezada-Monroy F, Dutta J, Cortes-Fernández R, Lara-Puente JH, Castro-Peralta F, Cunha LF, Sequeira-Trovão N, Lozano-Dubernard B, Rambaut A, van Bakel H, García-Sastre A (2016) Data from: Origins of the 2009 H1N1 influenza pandemic in swine in Mexico. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.m550m
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