Data from: A versatile pipeline for the multi-scale digital reconstruction and quantitative analysis of 3D tissue architecture

Morales-Navarrete H, Segovia-Miranda F, Klukowski P, Meyer K, Nonaka H, Marsico G, Chernykh M, Kalaidzidis A, Zerial M, Kalaidzidis Y

Date Published: February 12, 2016

DOI: http://dx.doi.org/10.5061/dryad.m67r6

 

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Title 3D ground truth models of liver tissue
Downloaded 18 times
Description 3D ‘ground truth’ images of idealized models of liver tissue ( 0.3 um x 0.3 um x 0.3u m per voxel)
Download models.zip (6.212 Mb)
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Title 3D simulated microscopy images of liver tissue
Downloaded 16 times
Description 3D simulated microscopy images of liver tissue models with 10:1, 4:1 and 2:1 signal-to-noise ratios.
Download model_image.zip (428.1 Mb)
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Title Scripts to generate 3D models and simulated images
Downloaded 19 times
Description MotionTracking scripts to generate 3D ‘ground truth’ voxelated models and simulated microscopy images of mouse liver tissue. A test example is included.
Download scripts_img_generation.zip (137.8 Mb)
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When using this data, please cite the original publication:

Morales-Navarrete H, Segovia-Miranda F, Klukowski P, Meyer K, Nonaka H, Marsico G, Chernykh M, Kalaidzidis A, Zerial M, Kalaidzidis Y (2015) A versatile pipeline for the multi-scale digital reconstruction and quantitative analysis of 3D tissue architecture. eLife 4: e11214. http://dx.doi.org/10.7554/eLife.11214

Additionally, please cite the Dryad data package:

Morales-Navarrete H, Segovia-Miranda F, Klukowski P, Meyer K, Nonaka H, Marsico G, Chernykh M, Kalaidzidis A, Zerial M, Kalaidzidis Y (2015) Data from: A versatile pipeline for the multi-scale digital reconstruction and quantitative analysis of 3D tissue architecture. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.m67r6
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