Data from: Quaternary range and demographic expansion of Liolaemus darwinii (Squamata: Liolaemidae) in the Monte Desert of Central Argentina using Bayesian phylogeography and ecological niche modelling

 

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Title Nexus_files
Downloaded 49 times
Description Compressed zip file containing the alignments of DNA sequences for cyt b and phased alleles of 14 anonymous nuclear loci in nexus format
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Title Phase_files
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Description Compressed zip file containing the input and output files of PHASE analyses for each of 14 anonymous nuclear loci
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Title TCS_files
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Description Compressed zip file containing the output log files of TCS analyses for cyt b and for phased alleles of 14 anonymous nuclear loci
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Title Beast_files
Downloaded 85 times
Description Compressed zip file containing the input files of Extended Bayesian Skyline Plot (EBSP), Standard Random Walk (SRW), and Relaxed Random Walk (RRW) analyses in BEAST. Log files for marginal likelihood estimation (MLE), the maximum credibility tree (MCC), and the KML file for visualization in Google Earth are also included for SRW and RRW analyses.
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Title Structure_files
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Description Compressed zip file containing the input and output files of STRUCTURE analyses for all loci and for cyt b only.
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Title Geneland_files
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Description Compressed zip file containing the input and output files of GENELAND analyses for all loci.
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Title Beast_strict_clock_files
Downloaded 69 times
Description Compressed zip file containing the input files of Extended Bayesian Skyline Plot (EBSP), Standard Random Walk (SRW), and Relaxed Random Walk (RRW) analyses in BEAST using a strict molecular clock for the substitution rate of cyt b. Log files for marginal likelihood estimation (MLE), the maximum credibility tree (MCC), and the KML file for visualization in Google Earth are also included for SRW and RRW analyses.
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Title 0k_patagonia
Downloaded 48 times
Description Bioclimatic layers for current conditions obtained from WorldClim used in species-distribution modeling with Maxent
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Title 21k_CCSM_Patagonia
Downloaded 51 times
Description Bioclimatic layers for past conditions (21 kya, CCSM model) obtained from WorldClim used in species-distribution modeling with Maxent
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Title 21k_MIROC_Patagonia
Downloaded 47 times
Description Bioclimatic layers for past conditions (21 kya, MIROC model) obtained from WorldClim used in species-distribution modeling with Maxent
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Title 120k_Patagonia
Downloaded 49 times
Description Bioclimatic layers for past conditions (120 kya) obtained from WorldClim used in species-distribution modeling with Maxent
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Title Georeferenced localities
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Description Geographic coordinates of sampled localities used in species-distribution modeling with Maxent
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When using this data, please cite the original publication:

Camargo A, Werneck FP, Morando M, Sites Jr JW, Avila LJ (2013) Quaternary range and demographic expansion of Liolaemus darwinii (Squamata: Liolaemidae) in the Monte Desert of Central Argentina using Bayesian phylogeography and ecological niche modelling. Molecular Ecology 22(15): 4038–4054. http://dx.doi.org/10.1111/mec.12369

Additionally, please cite the Dryad data package:

Camargo A, Werneck FP, Morando M, Sites Jr. JW, Avila LJ (2013) Data from: Quaternary range and demographic expansion of Liolaemus darwinii (Squamata: Liolaemidae) in the Monte Desert of Central Argentina using Bayesian phylogeography and ecological niche modelling. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.m81b5
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