Data from: HyRAD-X, a versatile method combining exome capture and RAD sequencing to extract genomic information from ancient DNA

Schmid S, Genevest R, Gobet E, Suchan T, Sperisen C, Tinner W, Alvarez N

Date Published: May 17, 2017

DOI: http://dx.doi.org/10.5061/dryad.m94f4

 

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Title HyRAD alignment against de novo generated catalog with Rainbow from sequenced probes (with Paleomix, which uses BWA)
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Title HyRAD alignment against Abies alba transcriptome (with Paleomix, which uses BWA)
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Title HyRAD-X alignment against Abies alba transcriptome (with Paleomix, which uses BWA)
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Title Demultiplexed hyRAD reads, trimmed and filtered according to quality
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Title Demultiplexed hyRAD-X reads, trimmed and filtered according to quality
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Download hyRADX_Demultipexed_Filtered_Reads.tar.gz (9.637 Gb)
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Title SNPs generated with hyRAD aligned against de novo catalog using VCFtools
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Title SNPs generated with hyRAD aligned against Abies alba transcriptome using VCFtools
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Title SNPs generated with hyRAD-X aligned against Abies alba transcriptome using VCFtools
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Download SNPs_hyRADX_Transcriptome_Filtered.vcf (2.101 Mb)
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When using this data, please cite the original publication:

Schmid S, Genevest R, Gobet E, Suchan T, Sperisen C, Tinner W, Alvarez N (2017) HyRAD-X, a versatile method combining exome capture and RAD sequencing to extract genomic information from ancient DNA. Methods in Ecology and Evolution, online in advance of print. http://dx.doi.org/10.1111/2041-210x.12785

Additionally, please cite the Dryad data package:

Schmid S, Genevest R, Gobet E, Suchan T, Sperisen C, Tinner W, Alvarez N (2017) Data from: HyRAD-X, a versatile method combining exome capture and RAD sequencing to extract genomic information from ancient DNA. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.m94f4
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