Data from: Fine-scale genetic structure due to adaptive divergence among microhabitats

Wagner DN, Baris TZ, Dayan DI, Du X, Oleksiak MF, Crawford DL

Date Published: January 24, 2017

DOI: http://dx.doi.org/10.5061/dryad.mc04d

 

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Title Unfiltered Hapmap
Downloaded 4 times
Description This file contains the raw, unfiltered hapmap from GBS. Individuals are identified as: MB - Mantoloking Basin, MC - Mantoloking Creek, MP - Mantoloking Pond, RB - Rutgers Basin, RC - Rutgers Creek, RP - Rutgers Pond, SB - Stone Harbor Basin, SC - Stone Harbor Creek, SP - Stone Harbor Pond
Download GBS_unfiltered_all.hmp.txt (307.3 Mb)
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Title Final Hapmap
Description Hapmap of SNPs used in final analyses. SNPs have been filtered to include 30% of all taxa, 80% of all sites, and a 5% minimum allele frequency. SNPs in significant LD (p < 0.01) have also been removed. Individuals are identified as: MB - Mantoloking Basin, MC - Mantoloking Creek, MP - Mantoloking Pond, RB - Rutgers Basin, RC - Rutgers Creek, RP - Rutgers Pond, SB - Stone Harbor Basin, SC - Stone Harbor Creek, SP - Stone Harbor Pond
Download DNW_thinned_4741.hmp.txt (1.303 Mb)
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Title Filtered Hapmap
Downloaded 1 time
Description Hapmap of SNPs after initial filtering. SNPs have been filtered to include 30% of all taxa, 80% of all sites. Individuals are identified as: MB - Mantoloking Basin, MC - Mantoloking Creek, MP - Mantoloking Pond, RB - Rutgers Basin, RC - Rutgers Creek, RP - Rutgers Pond, SB - Stone Harbor Basin, SC - Stone Harbor Creek, SP - Stone Harbor Pond
Download filtered80_30.hmp.txt (6.902 Mb)
Details View File Details

When using this data, please cite the original publication:

Wagner DN, Baris TZ, Dayan DI, Du X, Oleksiak MF, Crawford DL (2017) Fine-scale genetic structure due to adaptive divergence among microhabitats. Heredity 118(6): 594-604. http://dx.doi.org/10.1038/hdy.2017.6

Additionally, please cite the Dryad data package:

Wagner DN, Baris TZ, Dayan DI, Du X, Oleksiak MF, Crawford DL (2017) Data from: Fine-scale genetic structure due to adaptive divergence among microhabitats. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.mc04d
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