Data from: Comparative transcriptomic analysis of the evolution and development of flower size in Saltugilia (Polemoniaceae)

Landis JB, Soltis DE, Soltis PS

Date Published: June 23, 2017

DOI: http://dx.doi.org/10.5061/dryad.mc270

 

Files in this package

Content in the Dryad Digital Repository is offered "as is." By downloading files, you agree to the Dryad Terms of Service. To the extent possible under law, the authors have waived all copyright and related or neighboring rights to this data. CC0 (opens a new window) Open Data (opens a new window)

Title de novo assemblies for each taxa and a master reference for the genus
Downloaded 4 times
Description This includes de novo assembly of a "master reference" using all reads in the study, then filtered assemblies for each taxa using a 1 TPM threshold.
Download denovo_assemblies.tar (416.4 Mb)
Details View File Details
Title Nuclear_gene_alignments
Downloaded 3 times
Description MAFFT gene alignments for 89 putatively single copy nuclear genes, with a concatenated file in both .phy and .nex formats. Genes were sequenced using MYbaits exon capture kit, sequenced on Illumina platform, and then analyzed using HybPiper.
Download Nuclear_gene_alignments.tar (3.232 Mb)
Details View File Details
Title Plastid_gene_alignments
Downloaded 3 times
Description MAFFT gene alignments for 80 plastid protein coding genes, as well as a concatenated alignment in both .phy and .nex formats. Genes were sequenced using MYbaits targeted exon capture baits, sequenced on Illumina platform, and analyzed using HybPiper.
Download Plastid_gene_alignments.tar (2.715 Mb)
Details View File Details
Title Assembly annotation report
Downloaded 4 times
Description GO annotation report of the Saltugilia assembly using Annotate as part of the Trinity pipeline.
Download Dryad_annotation_report.xlsx (33.48 Mb)
Details View File Details

When using this data, please cite the original publication:

Landis JB, Soltis DE, Soltis PS (2017) Comparative transcriptomic analysis of the evolution and development of flower size in Saltugilia (Polemoniaceae). BMC Genomics 18(1): 475. http://dx.doi.org/10.1186/s12864-017-3868-2

Additionally, please cite the Dryad data package:

Landis JB, Soltis DE, Soltis PS (2017) Data from: Comparative transcriptomic analysis of the evolution and development of flower size in Saltugilia (Polemoniaceae). Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.mc270
Cite | Share
Download the data package citation in the following formats:
   RIS (compatible with EndNote, Reference Manager, ProCite, RefWorks)
   BibTex (compatible with BibDesk, LaTeX)

Search for data

Be part of Dryad

We encourage organizations to: