Data from: Plastid and seed morphology data support revised infrageneric classification and African origin of the pantropical genus Xylopia (Annonaceae)

Stull GW, Johnson DM, Murray NA, Couvreur TLP, Reeger JE, Roy CM

Date Published: June 15, 2017

DOI: http://dx.doi.org/10.5061/dryad.mf513

 

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Title Maximum likelihood analysis of matK
Downloaded 11 times
Description Maximum likelihood analysis of matK, showing bootstrap support
Download Suppl1_Xyl_matK.pdf (147.8 Kb)
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Title Maximum likelihood analysis of ndhF
Downloaded 8 times
Description Maximum likelihood analysis of ndhF, showing bootstrap support
Download Suppl2_Xyl_ndhF.pdf (166.6 Kb)
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Title Maximum likelihood analysis of psbA-trnH spacer
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Description Maximum likelihood analysis of psbA-trnH spacer, showing bootstrap support
Download Suppl3_Xyl_psbA-trnH.pdf (167.4 Kb)
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Title Maximum likelihood analysis of trnL-trnF spacer
Downloaded 12 times
Description Maximum likelihood analysis of trnL-trnF spacer, showing bootstrap support
Download Suppl4_Xyl_trnLF.pdf (159.1 Kb)
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Title Gene-partitioned maximum likelihood analysis
Downloaded 14 times
Description Maximum likelihood analysis of the four-marker data set (gene-partitioned), showing bootstrap support.
Download Suppl5_ML_4gene_PART_clado.pdf (178.5 Kb)
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Title Unpartitioned maximum likelihood analysis
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Description Maximum likelihood analysis of the four-marker data set (unpartitioned), showing bootstrap support.
Download Suppl6_ML_4gene_UNPART_clado.pdf (176.2 Kb)
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Title Bayesian analysis of the four-marker data set
Downloaded 9 times
Description Bayesian analysis of the four-marker data set, including support values for node.
Download Suppl7_BAYES_FOURGENE.pdf (201.1 Kb)
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Title Maximum parsimony analysis of the four-marker data set
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Description Maximum parsimony analysis of the four-marker data set, including bootstrap support values.
Download Suppl8_MP_4genes.pdf (171.6 Kb)
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Title Maximum parsimony reconstruction of aril types
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Description Maximum parsimony reconstruction of aril types, implemented in Mesquite
Download Suppl9_aril_mesquite.pdf (222.8 Kb)
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Title Maximum parsimony reconstruction of sarcotesta
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Description Maximum parsimony reconstruction of sarcotesta (presence vs. absence), implemented in Mesquite
Download Suppl10_sarcotesta_mesquite.pdf (216.0 Kb)
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Title matK alignment
Downloaded 2 times
Description matK multiple sequence alignment
Download Xyl_matK_wMissingTaxa_Inframe.nex (51.15 Kb)
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Title ndhF alignment
Downloaded 3 times
Description ndhF multiple sequence alignment
Download Xyl_ndhF_wMissinTaxa_Inframe.nex (63.01 Kb)
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Title psbA-trnH spacer alignment
Downloaded 1 time
Description psbA-trnH spacer multiple sequence alignment
Download Xyl_psbA-trnH_wMissingTaxa.nex (27.13 Kb)
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Title trnL-trnF spacer alignment
Downloaded 3 times
Description trnL-trnF spacer multiple sequence alignment
Download Xyl_trnLF_wMissingTaxa.nex (25.24 Kb)
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When using this data, please cite the original publication:

Stull GW, Johnson DM, Murray NA, Couvreur TLP, Reeger JE, Roy CM (2017) Plastid and seed morphology data support revised infrageneric classification and an African origin of the pantropical genus Xylopia (Annonaceae). Systematic Botany 42(2): 211-225. http://dx.doi.org/10.1600/036364417x695484

Additionally, please cite the Dryad data package:

Stull GW, Johnson DM, Murray NA, Couvreur TLP, Reeger JE, Roy CM (2017) Data from: Plastid and seed morphology data support revised infrageneric classification and African origin of the pantropical genus Xylopia (Annonaceae). Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.mf513
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