Data from: Genetic basis for variation in salinity tolerance between stickleback ecotypes

Kusakabe M, Ishikawa A, Ravinet M, Yoshida K, Makino T, Toyoda A, Fujiyama A, Kitano J

Date Published: October 12, 2016

DOI: http://dx.doi.org/10.5061/dryad.mg0jb

 

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Title SNP list of threespine stickleback
Downloaded 18 times
Description We selected SNPs that met the following three criteria: (1) 50-bp flanking regions on both sides of the SNP were conserved between anadromous and stream resident populations, (2) the Illumina designability rank score was one, (3) the SNP was located within coding regions if available. We chose 278 SNPs that were evenly distributed across the reference genome sequence (average distance of 1.56 Mb). Ten SNPs were chosen from the regions within or near five genes that are known to be or potentially important for freshwater adaptation.
Download Ga_SNPList.xlsx (56.10 Kb)
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Title QTL input data
Downloaded 9 times
Description The data sheet includes SNP information (A=anadromous, B=stream resident, H=heterozygote) with sex, body weight and plasma Na+ values.
Download lcf2sw_input.csv (106.3 Kb)
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Title 95%BI2
Downloaded 15 times
Description A list of genes located within the 95% bayesian credible intervals (95%BI) of QTL peak positions.
Download 95%BI2.xls (232.4 Kb)
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When using this data, please cite the original publication:

Kusakabe M, Ishikawa A, Ravinet M, Yoshida K, Makino T, Toyoda A, Fujiyama A, Kitano J (2017) Genetic basis for variation in salinity tolerance between stickleback ecotypes. Molecular Ecology 26(1): 304-319. http://dx.doi.org/10.1111/mec.13875

Additionally, please cite the Dryad data package:

Kusakabe M, Ishikawa A, Ravinet M, Yoshida K, Makino T, Toyoda A, Fujiyama A, Kitano J (2016) Data from: Genetic basis for variation in salinity tolerance between stickleback ecotypes. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.mg0jb
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