Data from: Data concatenation, Bayesian concordance and coalescent-based analyses of the species tree for the rapid radiation of Triturus newts

Wielstra B, Arntzen JW, van der Gaag KJ, Pabijan M, Babik W

Date Published: November 18, 2014

DOI: http://dx.doi.org/10.5061/dryad.mm81p

 

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Title Sanger sequencing
Downloaded 17 times
Description The additional sequences obtained with Sanger sequencing (in ABI format).
Download Sanger_sequencing.zip (5.184 Mb)
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Title SNP report
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Description The SNP report produced with GS Amplicon Variant Analyzer 2.8.
Download SNP report and overview 454 run.xlsm (4.073 Mb)
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Title Alignments
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Description The alignments (raw, with indels removed, and collapsed into haplotypes).
Download Alignments.zip (71.49 Kb)
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Title Input files
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Description The input files for BAPS, MrBayes, BUCKy and *BEAST.
Download Input_files_BAPS_MrBayes_Bucky_StarBEAST.zip (253.6 Kb)
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Title Individual gene trees
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Description The individual gene trees resulting from MrBayes used in BUCKy.
Download Gene_trees_MrBayes_BUCKy.zip (121.4 Kb)
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Title *BEAST species trees
Downloaded 3 times
Description The species tree resulting from the eight *BEAST runs.
Download Species_trees_StarBeast.zip (13.50 Kb)
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Title 454 sequencing
Downloaded 3 times
Description The raw 454 reads (in SFF format).
Download 454sequencing_RAW_data.sff (545.1 Mb)
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When using this data, please cite the original publication:

Wielstra B, Arntzen JW, van der Gaag KJ, Pabijan M, Babik W (2014) Data concatenation, Bayesian concordance and coalescent-based analyses of the species tree for the rapid radiation of Triturus newts. PLoS ONE 9(10): e111011. http://dx.doi.org/10.1371/journal.pone.0111011

Additionally, please cite the Dryad data package:

Wielstra B, Arntzen JW, van der Gaag KJ, Pabijan M, Babik W (2014) Data from: Data concatenation, Bayesian concordance and coalescent-based analyses of the species tree for the rapid radiation of Triturus newts. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.mm81p
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