Data from: Assessing the expected response to genomic selection of individuals and families in Eucalyptus breeding with an additive-dominant model

Resende RT, Resende MDV, Silva FF, Azevedo CF, Takahashi EK, Silva-Junior OB, Grattapaglia D

Date Published: June 2, 2017

DOI: https://doi.org/10.5061/dryad.ms580

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Title SNP Data for 24,806 polymorphic SNPs
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Description SNP Data for 24,806 polymorphic SNPs in 768 individuals of the 856 individuals used in the study. SNP data were generated using the EuCHIP60K. You will find detailed info on the SNP contained in this chip (genome location, target SNP, flanking sequence) in Silva-Junior et al. (2015). A flexible multi-species genome-wide 60K SNP chip developed from pooled resequencing 240 Eucalyptus tree genomes across 12 species. New Phytologist 206(4): 1527-1540. Please note that SNP data was available for 768 trees of the 856 trees phenotyped, as described in the paper
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Title Pedigree data for the population
Downloaded 6 times
Description Expected pedigree data for the experimental population of full sib families based on the pedigree registered by the breeder. Individuals used in the study go from ID 11 to 856.
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Title Phenotypic data for the 856 trees
Downloaded 5 times
Description Phenotypic data for the 856 trees of the experimental population. Data include information on the progeny trial (called landscape in the datafile), block,soil type, planting spacing, age at measurement in years, followed by the trait data, mean annual volume growth increment (MAI), basic wood density (BWD) and screened cellulose pulp yield (SPY). Please note that SNP data were available only for 768 trees of these 856 phenotyped trees as described in the paper
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When using this data, please cite the original publication:

Resende RT, Resende MDV, Silva FF, Azevedo CF, Takahashi EK, Silva-Junior OB, Grattapaglia D (2017) Assessing the expected response to genomic selection of individuals and families in Eucalyptus breeding with an additive-dominant model. Heredity 119(4): 245-255. https://doi.org/10.1038/hdy.2017.37

Additionally, please cite the Dryad data package:

Resende RT, Resende MDV, Silva FF, Azevedo CF, Takahashi EK, Silva-Junior OB, Grattapaglia D (2017) Data from: Assessing the expected response to genomic selection of individuals and families in Eucalyptus breeding with an additive-dominant model. Dryad Digital Repository. https://doi.org/10.5061/dryad.ms580
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