Data from: Identification of a bacterial pathogen associated with Porites white patch syndrome in the Western Indian Ocean

Séré MG, Tortosa P, Chabanet P, Quod J, Sweet MJ, Schleyer MH

Date Published: July 21, 2015

DOI: http://dx.doi.org/10.5061/dryad.ms6b9

 

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Title PWPS bacterial cultures
Downloaded 11 times
Description Sequences (16S rRNA gene) of the bacterial isolates used in phase 1 of the inoculation experiment. The software used to create the data file (fasta) is Genesious.
Download PWPS bacterial cultures.fasta (232.9 Kb)
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Title Bacterial candidates (Infection trials)
Downloaded 5 times
Description Sequences (16S rRNA gene) of the bacterial strains (potential PWPS pathogens) used for infectivity experiements. The software used to create the data file (Fasta) is GENEIOUS Pro (V.5.6.6).
Download Bacterial candidates (Infection trials).fasta (12.61 Kb)
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Title Nucleotide alignment (16S rRNA gene)
Downloaded 8 times
Description Nucleotide alignment of the isolate "P180R" (16S rRNA gene) performed with reference sequences related to multiple bacterial strains selected from NCBI using GENEIOUS alignment method.
Download Nucleotide alignment (16S rRNA gene).fasta (26.25 Kb)
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Title MLST alignment
Downloaded 6 times
Description Mutlilocus sequence typing (MLST) alignment of the stain P180R using the partial sequences of 16S rRNA (1422 bp), pyrH (590 bp), recA (766 bp) and rpoA (802bp) genes. The sequences obtained for each gene were aligned with reference sequences related to multiple bacterial strains selected from NCBI using GENEIOUS alignment method
Download MLST alignment.fasta (43.63 Kb)
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Title Nucleotide alignment (pyrH gene)
Downloaded 6 times
Description Nucleotide alignment of the isolate "P180R" (pyrH gene) performed with reference sequences related to multiple bacterial strains selected from NCBI using GENEIOUS alignment method.
Download Nucleotide alignment (pyrH gene).fasta (8.862 Kb)
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Title PWPS bacterial cultures (corresponding codes and blast results)
Downloaded 11 times
Description Bacterial strains isolated from PWPS-infected Porites colonies.This is a "xlsx" file containing each bacterial strain codes with their respective blast results.
Download PWPS bacterial cultures (corresponding cod....xlsx (17.53 Kb)
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Title Tree for the 16S rRNA gene
Downloaded 11 times
Description Neighbour-joining phylogenetic tree for the 16S rRNA gene gene showing the relatedness of the strain P180R with reference Vibrio strains. The software used to create the data (Newick) is Geneious 6.1.5.
Download Tree for the 16S rRNA gene.newick (1.363 Kb)
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Title Tree for the pyrH gene
Downloaded 5 times
Description Phylogenetic trees built by the neighbour-joining method using the NKY model of GENEIOUSTM Pro (V.6.1.5) with bootstrap values based on 1000 replicates for the isolate "P180R" (pyrH gene).
Download Tree for the pyrH gene.newick (1.111 Kb)
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Title Consensus tree (concatanation)
Downloaded 6 times
Description Consensus tree built by the neighbour-joining method using the NKY model of GENEIOUS Pro (V.6.1.5) with bootstrap values based on 1000 replicates for the isolate "P180R" (Partial sequences of 16S rRNA (1422 bp), pyrH (590 bp), recA (766 bp) and rpoA (802bp)).
Download Consensus tree (concatanation).newick (769 bytes)
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When using this data, please cite the original publication:

Séré MG, Tortosa P, Chabanet P, Quod J, Sweet MJ, Schleyer MH (2015) Identification of a bacterial pathogen associated with Porites white patch syndrome in the Western Indian Ocean. Molecular Ecology, online in advance of print. http://dx.doi.org/10.1111/mec.13326

Additionally, please cite the Dryad data package:

Séré MG, Tortosa P, Chabanet P, Quod J, Sweet MJ, Schleyer MH (2015) Data from: Identification of a bacterial pathogen associated with Porites white patch syndrome in the Western Indian Ocean. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.ms6b9
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