Data from: Parallel tagged amplicon sequencing of relatively long PCR products using the Illumina HiSeq platform and transcriptome assembly

Feng Y, Liu Q, Chen M, Liang D, Zhang P

Date Published: May 8, 2015

DOI: http://dx.doi.org/10.5061/dryad.n21cr

 

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Content in the Dryad Digital Repository is offered "as is." By downloading files, you agree to the Dryad Terms of Service. To the extent possible under law, the authors have waived all copyright and related or neighboring rights to this data. CC0 (opens a new window) Open Data (opens a new window)

Title Python Script
Description This file contains the python scripts used in this study. These scripts can be used to analysis next generation sequence data step by step, including: sorting, assembling, trimming, refining and combining.
Download Python Script.zip (14.02 Kb)
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Title Total_1435_consensus_seqs
Description This is the final consensus sequences produced by our approach. These data can be used for phylogenetic analysis.
Download Total_1435_consensus_seqs.fasta (1.449 Mb)
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Title Alignment_for_RAxML
Description This alignment is used for ML analysis.
Download Alignment_for_RAxML.phy (1.334 Mb)
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Title Alignment_for_Mrbayes
Description This alignment is used for Mrbayes analysis. The parameters are also included in this file.
Download Alignment_for_Mrbayes.nex (1.336 Mb)
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Title 16taxa_species_tree
Description This is the species tree result.
Download 16taxa_species_tree.nexus (1.432 Kb)
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Title 16_taxa_raxm_&bayes_tree
Description This tree file contains the results from RAxML and Mrbayes. Both methods result the same topologies and same support values.
Download 16_taxa_raxm_&bayes_tree.nexus (1.399 Kb)
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When using this data, please cite the original publication:

Feng Y, Liu Q, Chen M, Liang D, Zhang P (2015) Parallel tagged amplicon sequencing of relatively long PCR products using the Illumina HiSeq platform and transcriptome assembly. Molecular Ecology Resources 16(1):91-102. http://dx.doi.org/10.1111/1755-0998.12429

Additionally, please cite the Dryad data package:

Feng Y, Liu Q, Chen M, Liang D, Zhang P (2015) Data from: Parallel tagged amplicon sequencing of relatively long PCR products using the Illumina HiSeq platform and transcriptome assembly. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.n21cr
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