Data from: Conservation genetics and the implication for recovery of the endangered Mitchell’s satyr butterfly, Neonympha mitchellii mitchellii

 

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Title AL15_sort
Description Sorted nexus file for anonymous locus 15
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Title AL21_sort
Description Sorted nexus file for anonymous locus 21
Download AL21_sort.nex (14.52 Kb)
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Title COI_sort
Description sorted nexus file for cytochrom oxidase I
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Title EF1a_sort
Description sorted nexus file for Elongation factor 1a
Download EF1a_sort.nex (30.13 Kb)
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Title GAPDH_sort
Description Sorted nexus file for glyceraldehyde phosphate dehydrogenase
Download GAPDH_sort.nex (32.35 Kb)
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Title RpS5_sort
Description sorted nexus file for ribsomal protein S5
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Title Analysis_code
Description Code require to run analyses conducted in this paper and reproduce the results.
Download Analysis_code.txt (2.293 Kb)
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Title MSB_Sanger_plots
Description R code needed to create the map, deltaK plot, and IMa2 plot from this paper
Download MSB_Sanger_plots.R (4.12 Kb)
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Title IM_9
Description File for IMa2 analysis 9
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Title IM_10
Description File to conduct IMa2 analysis 10
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Title IM_11
Description File needed to conduct IMa2 analysis 11
Download MSB_IM_11 (167.4 Kb)
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Title IM_12
Description File to conduct IMa2 analysis 12
Download MSB_IM_12 (71.11 Kb)
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Title IM_13
Description File to conduct IMa2 analysis 13
Download MSB_IM_13 (66.04 Kb)
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Title MSB_IM_14
Description File to conduct IMa2 analysis 14
Download MSB_IM_14.txt (177.5 Kb)
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Title MSB_OG2
Description Nexus file needed to run RAxML analysis
Download MSB_OG2.nex (150.2 Kb)
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Title MSB_Partition
Description Partition file needed by RAxML
Download MSB_OG2_part (130 bytes)
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Title MSB_p9
Description Results from deltaK analysis needed to generate plot
Download MSB_p9.csv (333 bytes)
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Title MSB_IM_9h
Description Posterior parameter estimates needed to create plots for analysis IM_9
Download MSB_IM_9h.xlsx (147.8 Kb)
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Title MSB_IM_11m
Description Posterior parameter estimates needed to create plots for analysis 11m
Download MSB_IM_11m.csv (91.55 Kb)
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Title MSB_IM_14a
Description Posterior parameter estimates needed to create plots for analysis 14a
Download MSB_IM_14a.csv (91.86 Kb)
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Title IM_10j
Description Posterior parameter estimates needed to create plots for analysis 10j
Download IM_10j.csv (88.37 Kb)
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Title MSB_IM13d
Description Posterior parameter estimates needed to create plots for analysis 13d
Download MSB_IM13d.csv (113.4 Kb)
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Title MSB_IM_12n
Description Posterior parameter estimates needed to create plots for analysis 12n
Download MSB_IM_12n.csv (89.81 Kb)
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When using this data, please cite the original publication:

Hamm CA, Rademacher V, Landis DA, Williams BL (2013) Conservation genetics and the implication for recovery of the endangered Mitchell’s satyr butterfly, Neonympha mitchellii mitchellii. Journal of Heredity 105(1): 19-27. http://dx.doi.org/10.1093/jhered/est073

Additionally, please cite the Dryad data package:

Hamm CA, Rademacher V, Landis DA, Williams BL (2013) Data from: Conservation genetics and the implication for recovery of the endangered Mitchell’s satyr butterfly, Neonympha mitchellii mitchellii. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.n31kq
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