Data from: Gene duplication, population genomics and species-level differentiation within a tropical mountain shrub

Mastretta-Yanes A, Zamudio S, Jorgensen TH, Arrigo N, Alvarez N, Piñero D, Emerson BC

Date Published: September 24, 2014

DOI: http://dx.doi.org/10.5061/dryad.n3jk5

 

Files in this package

Content in the Dryad Digital Repository is offered "as is." By downloading files, you agree to the Dryad Terms of Service. To the extent possible under law, the authors have waived all copyright and related or neighboring rights to this data. CC0 (opens a new window) Open Data (opens a new window)

Title Demultiplexing and de novo assembly details
Description Contains demultiplexing and de novo assembly details of data used for paralogs filtering and subsequent population genomics analyses.
Download //dx.doi.org/10.5061/dryad.g52m3 (0 bytes)
Details View File Details
Title 1stacks
Downloaded 21 times
Description Contains data directories used by scripts from the section "3Berberis_phylogeo" of this repository for running the *populations* program of *Stacks* after putative paralogous loci have been filtered.
Download README.mdown (734 bytes)
Download 1stacks.zip (1.075 Gb)
Details View File Details
Title 3Berberis_phylogeo
Downloaded 25 times
Description Contains scripts for paralogous loci filtering, output data from the *populations* program of *Stacks*, as well as R scripts used for analyses and plotting.
Download README.mdown (4.234 Kb)
Download 3Berberis_phylogeo.zip (50.22 Mb)
Details View File Details

When using this data, please cite the original publication:

Mastretta-Yanes A, Zamudio S, Jorgensen TH, Arrigo N, Alvarez N, Piñero D, Emerson BC (2014) Gene duplication, population genomics and species-level differentiation within a tropical mountain shrub. Genome Biology and Evolution 6(10): 2611-2624. http://dx.doi.org/10.1093/gbe/evu205

Additionally, please cite the Dryad data package:

Mastretta-Yanes A, Zamudio S, Jorgensen TH, Arrigo N, Alvarez N, Piñero D, Emerson BC (2014) Data from: Gene duplication, population genomics and species-level differentiation within a tropical mountain shrub. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.n3jk5
Cite | Share
Download the data package citation in the following formats:
   RIS (compatible with EndNote, Reference Manager, ProCite, RefWorks)
   BibTex (compatible with BibDesk, LaTeX)

Search for data

Be part of Dryad

We encourage organizations to: