Data from: The impact of Quaternary climate oscillations on divergence times and historical population sizes in Thylamys opossums from the Andes

Giarla TC, Jansa SA

Date Published: March 24, 2015

DOI: http://dx.doi.org/10.5061/dryad.n5s02

 

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Title BEAST Divergence Dating Tree Files
Downloaded 7 times
Description Tree files resulting from analysis of (1) CYTB alone in BEAST, (2) 26 genes in BEAST, and (3) 16 genes in *BEAST.
Download BEAST Divergence Dating Tree Files.zip (203.1 Kb)
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Title BEAST Divergence Dating XML Files
Downloaded 10 times
Description Input XML files for (1) CYTB alone in BEAST, (2) 26 genes in BEAST, and (3) 16 genes in *BEAST.
Download BEAST Divergence Dating XML Files.zip (144.2 Kb)
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Title BEAST EBSP XML Files
Downloaded 24 times
Description BEAST Extended Bayesian Skyline Plot XML input files for all six Thylamys lineages.
Download BEAST EBSP XML Files.zip (82.19 Kb)
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Title BEAST PS SS Model Comparisons XML Files
Downloaded 10 times
Description BEAST input XML files for Path Sampling/Stepping Stone Sampling coalescent model comparisons (constant size versus exponential change) for all six Thylamys lineages.
Download BEAST PS SS Model Comparisons XML Files.zip (166.9 Kb)
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Title BPP Input Files
Downloaded 8 times
Description All input files used in BPP for the estimation of divergence times between A and B lineages.
Download BPP Input Files.zip (4.808 Mb)
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Title Geographic Information
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Description Excel file containing specimen museum voucher numbers, detailed locality information, and geographic coordinates for individuals sequenced in Giarla et al. (2014).
Download Geographic Information.xlsx (60.54 Kb)
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Title 16 Nexus Files from Giarla et al 2014
Downloaded 9 times
Description DNA alignments of 14 anonymous loci, one X-linked intron, and the mitochondrial gene CYTB. Densely sampled among the six focal Andean lineages. Data originally from Giarla et al. (2014).
Download 16 Nexus Files from Giarla et al 2014.zip (41.52 Kb)
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Title 26 Nexus Files from Giarla and Jansa 2014
Downloaded 5 times
Description Alignments of 26 loci used to estimate divergence times in BEAST. Loci are sampled across 50 different marsupial taxa. Originally from Giarla and Jansa (2014).
Download 26 Nexus Files from Giarla and Jansa 2014.zip (101.7 Kb)
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When using this data, please cite the original publication:

Giarla TC, Jansa SA (2015) The impact of Quaternary climate oscillations on divergence times and historical population sizes in Thylamys opossums from the Andes. Molecular Ecology 24(10): 2495-2506. http://dx.doi.org/10.1111/mec.13173

Additionally, please cite the Dryad data package:

Giarla TC, Jansa SA (2015) Data from: The impact of Quaternary climate oscillations on divergence times and historical population sizes in Thylamys opossums from the Andes. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.n5s02
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