Data from: Genome- and transcriptome-assisted development of nuclear insertion/deletion markers for Calanus species (Copepoda: Calanoida) identification

Smolina I, Kollias S, Poortvliet M, Nielsen T, Lindeque P, Castellani C, Møller E, Blanco-Bercial L, Hoarau G

Date Published: February 20, 2014

DOI: http://dx.doi.org/10.5061/dryad.n8f30

 

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Title C. finmarchicus genome (contigs)
Downloaded 12 times
Description Contigs of C. finmarchicus genome assembled with Geneious 6.1.6. Sequencing technology: Ion Torrent, 200 bp. File contain consensus sequences in fastq file.
Download Cfin_Genome_Contigs.fasta (30.71 Mb)
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Title C. glacialis genome (contigs)
Downloaded 7 times
Description Contigs of C. glacialis genome assembled with Geneious 6.1.6. Sequencing technology: Ion Torrent, 200 bp. File contain consensus sequences in fastq file.
Download Cgla_Genome_Contigs.fasta (11.50 Mb)
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Title C. finmarchicus transcriptome (contigs)
Downloaded 6 times
Description Contigs of C. finmarchicus transcriptome assembled with Geneious 6.1.6. Sequencing technology: Ion Torrent, 200 bp. File contain consensus sequences in fastq file.
Download Cfin_Transcriptome_Contigs.fasta (59.71 Mb)
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Title C. glacialis transcriptome (contigs)
Downloaded 5 times
Description Contigs of C. glacialis transcriptome assembled with Geneious 6.1.6. Sequencing technology: Ion Torrent, 200 bp. File contain consensus sequences in fastq file.
Download Cgla_Transcriptome_Contigs.fasta (75.63 Mb)
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Title Microsatellites_Genotypes
Downloaded 13 times
Description Table of microsatellite genotyping for species identification of Calanus finmarchicus and C. glacialis
Download Msat_Genotypes_SuppInfo.xlsx (65.04 Kb)
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When using this data, please cite the original publication:

Smolina I, Kollias S, Poortvliet M, Nielsen T, Lindeque P, Castellani C, Møller E, Blanco-Bercial L, Hoarau G (2014) Genome- and transcriptome-assisted development of nuclear insertion/deletion markers for Calanus species (Copepoda: Calanoida) identification. Molecular Ecology Resources 14(5): 1072-1079. http://dx.doi.org/10.1111/1755-0998.12241

Additionally, please cite the Dryad data package:

Smolina I, Kollias S, Poortvliet M, Nielsen T, Lindeque P, Castellani C, Møller E, Blanco-Bercial L, Hoarau G (2014) Data from: Genome- and transcriptome-assisted development of nuclear insertion/deletion markers for Calanus species (Copepoda: Calanoida) identification. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.n8f30
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