Data from: The contrasting phylodynamics of human influenza B viruses

Vijaykrishna D, Holmes EC, Joseph U, Fourment M, Su YCF, Halpin R, Lee RTC, Deng Y, Gunalan V, Lin X, Stockwell T, Fedorova NB, Zhou B, Spirason N, Kühnert DK, Bošková V, Stadler T, Costa A, Dwyer DE, Huang QS, Jennings LC, Rawlinson W, Sullivan SG, Hurt AC, Maurer-Stroh S, Wentworth D, Smith GJD, Barr IG

Date Published: January 29, 2015

DOI: http://dx.doi.org/10.5061/dryad.n940b

 

Files in this package

Content in the Dryad Digital Repository is offered "as is." By downloading files, you agree to the Dryad Terms of Service. To the extent possible under law, the authors have waived all copyright and related or neighboring rights to this data. CC0 (opens a new window) Open Data (opens a new window)

Title Influenza B virus sequences from Australia and New Zealand, 2002–2013
Downloaded 37 times
Description Tab delimited text file for 908 newly generated influenza B virus samples isolated from humans in Australia and New Zealand during 2002–2013. For each of these samples, virus sample name, collection data, country and GenBank accession numbers of each gene segment are provided.
Download 908_virus_accession.txt (125.2 Kb)
Details View File Details
Title Prevalence percentage
Downloaded 15 times
Description Tab delimited text file providing percentages of viruses that were of type B in Australia (aus) and New Zealand (nz) and the three eastern states of Australia, New South Wales (nsw), Queensland (qld) and Victoria (vic). The percentage of viruses that were of Yamagata and Victoria lineages among all influenza B virus positive samples are provided for Australia (aus_yamagata and aus_victoria) and New Zealand (nz_yamagata and nz_victoria).
Download Fig2_percentrage_prevalence.txt (681 bytes)
Details View File Details
Title Virus accession numbers
Downloaded 11 times
Description Tab delimited text file for 908 newly generated influenza B virus samples isolated from humans in Australia and New Zealand during 2002–2013. For each of these samples, virus sample name, collection data, country and GenBank or GISAID accession numbers of each gene segment are provided.
Download Virus_accession_numbers.txt (121.3 Kb)
Details View File Details
Title BEAST xml file - B/Victoria
Downloaded 23 times
Description Beast input file (xml) with data and parameters used for Bayesian phylogenetic analysis of the HA dataset of B/Victoria viruses isolated in Australia and New Zealand.
Download B_Victoria.xml (1.080 Mb)
Details View File Details
Title BEAST xml file - B/Yamagata
Downloaded 20 times
Description Beast input file (xml) with data and parameters used for Bayesian phylogenetic analysis of the HA dataset of B/Yamagata viruses isolated in Australia and New Zealand.
Download B_Yamagata.xml (703.0 Kb)
Details View File Details
Title Cases positive for influenza B viruses
Downloaded 17 times
Description Tab delimited text file providing patient age, country, date of sampling and lineage (Victoria or Yamagata) of 5260 influenza B viruses collected in Australia and New Zealand, 2002–2013
Download cases.tsv (243.1 Kb)
Details View File Details
Title Hemagglutination inhibition titers
Downloaded 37 times
Description Excel file with two sheets proving raw HI titer values for representative influenza B virus antigens of Victoria and Yamagata viruses isolated in Australia and New Zealand during 2002–2013 estimated against representative antisera. Strain names and passage history are provided for each antigen and antisera.
Download HI_titers.xlsx (66.31 Kb)
Details View File Details
Title Phylodynamic analysis
Downloaded 43 times
Description Beast input file (xml) with data and parameters used to estimate epidemiological parameters (the effective reproductive number, Re) for each epidemic of virus lineages in Australia and New Zealand using the Birth-Death susceptible-infected-removed (BDSIR) model.
Download BDSIR_analyses.zip (69.92 Kb)
Details View File Details
Title Phylogeographic analysis
Downloaded 40 times
Description Beast input file (xml) with data and parameters used to estimate counts of migration to and from Australia and New Zealand using the CTMC model.
Download CTMC analyses.zip (179.6 Kb)
Details View File Details

When using this data, please cite the original publication:

Vijaykrishna D, Holmes EC, Joseph U, Fourment M, Su YCF, Halpin R, Lee RTC, Deng Y, Gunalan V, Lin X, Stockwell T, Fedorova NB, Zhou B, Spirason N, Kühnert DK, Bošková V, Stadler T, Costa A, Dwyer DE, Huang QS, Jennings LC, Rawlinson W, Sullivan SG, Hurt AC, Maurer-Stroh S, Wentworth D, Smith GJD, Barr IG (2015) The contrasting phylodynamics of human influenza B viruses.eLife, e05055. http://dx.doi.org/10.7554/eLife.05055

Additionally, please cite the Dryad data package:

Vijaykrishna D, Holmes EC, Joseph U, Fourment M, Su YCF, Halpin R, Lee RTC, Deng Y, Gunalan V, Lin X, Stockwell T, Fedorova NB, Zhou B, Spirason N, Kühnert DK, Bošková V, Stadler T, Costa A, Dwyer DE, Huang QS, Jennings LC, Rawlinson W, Sullivan SG, Hurt AC, Maurer-Stroh S, Wentworth D, Smith GJD, Barr IG (2015) Data from: The contrasting phylodynamics of human influenza B viruses. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.n940b
Cite | Share
Download the data package citation in the following formats:
   RIS (compatible with EndNote, Reference Manager, ProCite, RefWorks)
   BibTex (compatible with BibDesk, LaTeX)

Search for data

Be part of Dryad

We encourage organizations to: