Data from: De novo genome assembly of Camptotheca acuminata, a natural source of the anti-cancer compound camptothecin

Zhao D, Hamilton JP, Pham GM, Crisovan E, Wiegert-Rininger K, Vaillancourt B, DellaPenna D, Buell CR

Date Published: July 28, 2017

DOI: http://dx.doi.org/10.5061/dryad.nc8qr

 

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Title Readme.txt
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Description Readme.txt
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Title cac_genome_assembly_v2.4.fa
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Description Genome assembly of C. acuminata, containing 1,394 scaffold sequences
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Title full_table_BUSCO.tsv
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Description full_table_BUSCO.tsv
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Title short_summary_BUSCO.txt
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Description short_summary_BUSCO.txt
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Title missing_busco_list_BUSCO.tsv
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Title cac_hc_gene_models.gff3
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Description Generic feature format file (gff3) of high-confidence genes in C. acuminata
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Title cac_hc_gene_models.cdna.fa
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Description Transcript sequences (cDNA) of high-confidence genes in C. acuminata
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Title cac_hc_gene_models.cds.fa
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Description Coding sequences (CDS) of high-confidence genes in C. acuminata
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Title cac_hc_gene_models.pep.fa
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Description Protein sequences of high-confidence genes in C. acuminata
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Title cac_hc_gene_models.func_anno.txt
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Description Functional annotation of high-confidence genes in C. acuminata
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Title cac_hc_gene_models.repr.gff3
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Description gff3 of representative models of high-confidence genes in C. acuminata
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Title cac_hc_gene_models.repr.pep.fa
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Description Protein sequences of representative models of high-confidence genes in C. acuminata
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Title Camptotheca_gene_expression_matrix.xlsx
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Description Expression abundance of representative gene models
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Title topoisomerase_ML_tree.nwk
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Description Topoisomerase phylogenetic tree file in newick format
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Title Cac_scaffolds_v2.4.fa.repeatmasker.gff
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Description GFF file of the repeat-masked genome
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When using this data, please cite the original publication:

Zhao D, Hamilton JP, Pham GM, Crisovan E, Wiegert-Rininger K, Vaillancourt B, DellaPenna D, Buell CR (2017) De novo genome assembly of Camptotheca acuminata, a natural source of the anti-cancer compound camptothecin. GigaScience, online in advance of print. http://dx.doi.org/10.1093/gigascience/gix065

Additionally, please cite the Dryad data package:

Zhao D, Hamilton JP, Pham GM, Crisovan E, Wiegert-Rininger K, Vaillancourt B, DellaPenna D, Buell CR (2017) Data from: De novo genome assembly of Camptotheca acuminata, a natural source of the anti-cancer compound camptothecin. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.nc8qr
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