Data from: Pan-genome dynamics of Pseudomonas gene complements enriched across hexachlorocyclohexane dumpsite

Sharma A, Sangwan N, Negi V, Kohli P, Khurana JP, Rao DLN, Lal R

Date Published: April 23, 2015

DOI: http://dx.doi.org/10.5061/dryad.nd154

 

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Title Maximum Likelihood Tree (Newick Format) for 51 Pseudomonas Genomes using Azotobacter vinelandii CA as outgroup.
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Description Conserved genes (400) based phylogenetic tree of strain RL and representative Pseudomonas genotypes constructed at 1000 bootstrap with Azotobacter vinelandii CA as an out-group. Branch lengths are drawn to scale, with scale bar indicating the number of amino acid substitutions. Numbers on branches are the bootstrap values of the clusters on the right.
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Title Maximum Likelihood Tree (Nexus Format) for 51 Pseudomonas Genomes using Azotobacter vinelandii CA as outgroup.
Downloaded 8 times
Description Conserved genes (400) based phylogenetic tree of strain RL and representative Pseudomonas genotypes constructed at 1000 bootstrap with Azotobacter vinelandii CA as an out-group. Branch lengths are drawn to scale, with scale bar indicating the number of amino acid substitutions. Numbers on branches are the bootstrap values of the clusters on the right.
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Title Alignment Files for protein coding sequences of bacterial conserved marker genes (n=400) for 51 representative Pseudomonas genomes.
Downloaded 5 times
Description Phylogenetic status of strain RL was determined using 400 conserved bacterial marker genes and representative whole genome sequences from 40 diverse Pseudomonas species as available in NCBI database (http://www.ncbi.nlm.nih.gov/genome/browse/representative/). A phylogenetic tree was hence constructed using maximum likelihood (ML) methodology on the basis of protein coding bacterial conserved gene (400) sequences [39] determined for Pseudomonas sp. RL and 50 other Pseudomonas strains with Azotobacter vinelandii being the outgroup.
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When using this data, please cite the original publication:

Sharma A, Sangwan N, Negi V, Kohli P, Khurana JP, Rao DLN, Lal R (2015) Pan-genome dynamics of Pseudomonas gene complements enriched across hexachlorocyclohexane dumpsite. BMC Genomics 16: 313. http://dx.doi.org/10.1186/s12864-015-1488-2

Additionally, please cite the Dryad data package:

Sharma A, Sangwan N, Negi V, Kohli P, Khurana JP, Rao DLN, Lal R (2015) Data from: Pan-genome dynamics of Pseudomonas gene complements enriched across hexachlorocyclohexane dumpsite. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.nd154
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