Data from: Genetic diversity and distribution patterns of diploid and polyploid hybrid water frog populations (Pelophylax esculentus complex) across Europe

Hoffmann A, Plötner J, Pruvost NBM, Christiansen DG, Röthlisberger S, Mikulíček P, Choleva L, Cogălniceanu D, Sas-Kovács I, Shabanov D, Morozov-Leonov S, Reyer H

Date Published: July 20, 2015

DOI: http://dx.doi.org/10.5061/dryad.nd1hg

 

Files in this package

Content in the Dryad Digital Repository is offered "as is." By downloading files, you agree to the Dryad Terms of Service. To the extent possible under law, the authors have waived all copyright and related or neighboring rights to this data. CC0 (opens a new window) Open Data (opens a new window)

Title Study sites, sample sizes and population composition
Downloaded 28 times
Description Geographic coordinates, sample sizes and genotypic composition of water frog populations sampled for microsatellite analysis. Classification was based on microsatellite results and was complemented by additional information on the population through personal observation (e.g. on presence of parental genotypes even though none were captured for sampling). nL represents the number of individuals used for the L genome data set, nR stands for the number of individuals used for the R genome data set. N represents the number of individuals used in total from the respective population. Percentages account for the proportion of genotypes within N. Please note that the population marked with * is a subsample from a larger sample. Individuals from this population used in this study were selected to represent the proportion of genotypes in the larger original sample, which partly resulted in a deviation in sample size between nL and nR.
Download Hoffmann et al S1 (new).docx (58.15 Kb)
Details View File Details
Title Origin and number of frogs used for mtDNA analysis
Downloaded 23 times
Description Populations, geographic coordinates and sample sizes of samples used for mtDNA analysis. The column “Microsat No.*” refers to the numbering of populations in Table S1 (new), where only populations used in microsatellite analyses are listed. Types of mtDNA are abbreviated as follows: les = lessonae-type, rid = ridibundus-type, ber = bergeri-type, cf. bed = cf. bedriagae-type.
Download Hoffmann et al S2 (new).xlsx (19.68 Kb)
Details View File Details
Title Samples for microsatellite and mt DNA analysis
Downloaded 19 times
Description The Table summarizes which samples have been analyzed with microsatellites and/or mtDNA sequencing. Given are ID numbers, names and coordinates of samples sites an genotypes of frogs
Download Hoffmann et al S3 (new).xlsx (109.9 Kb)
Details View File Details
Title Microsatellite markers
Downloaded 16 times
Description This Table lists the alleles found in each sampled individual (specified by ID numbers) on the Basis of six microsatellite markers
Download Hoffmann et al S4 (new).xlsx (211.5 Kb)
Details View File Details
Title Genetic structure within the R and L genome
Downloaded 10 times
Description Genetic differentiation within the R and L genome of water frogs of the Pelophylax esculentus complex, according to Bayesian analyses implemented in the program STRUCTURE. The proportion of membership (parameter q according to Pritchard et al. 2000) of each individual in each of the two (R genome) and four (L genome) inferred clusters is shown.
Download Hoffmann et al S5 (new).xlsx (66.59 Kb)
Details View File Details
Title R-genome phylogeny (input)
Downloaded 8 times
Description Data input for R-Genome phylogeny in Fig. 6
Download Hoffmann et al S6a (new).txt (88.02 Kb)
Details View File Details
Title R-phylogeny (output)
Downloaded 6 times
Description Data Output for RgGenome phylogeny in Fig. 6
Download Hoffman et al S6b (new).nwk (2.079 Kb)
Details View File Details
Title L-genome phylogeny (input)
Downloaded 7 times
Description Data input for L-genome phylogeny in Fig. 7
Download Hoffmann et al S7a (new).txt (39.58 Kb)
Details View File Details
Title L-phylogeny (output)
Downloaded 4 times
Description Data output for L-Genome phylogeny in Fig. 7
Download Hoffman et al S7b (new).nwk (1.837 Kb)
Details View File Details
Title mtDNA sequences
Downloaded 11 times
Description Shown are mtDNAsequences for all individuals (characterized by ID numbers) that were anaylzed according to Table S3 (new).
Download Hoffmann et al S8 (new).nexus (1.722 Mb)
Details View File Details
Title mt DNA haplotypes across genotypes and populations
Downloaded 11 times
Description Supplement to Figure 8, showing the distribution of mtDNA haplotypes across genotypes and population types. Asterisks (*, **) indicate novel findings of the respective type of mtDNA in mixed-ploidy populations [24]* (Untermassfeld, Germany) and [52]** (Gaidary Iskov, Ukraine).
Download Hoffmann et al S9 (new).docx (68.22 Kb)
Details View File Details

When using this data, please cite the original publication:

Hoffmann A, Plötner J, Pruvost NBM, Christiansen DG, Röthlisberger S, Choleva L, Mikulíček P, Cogălniceanu D, Sas-Kovács I, Shabanov D, Morozov-Leonov S, Reyer H (2015) Genetic diversity and distribution patterns of diploid and polyploid hybrid water frog populations (Pelophylax esculentus complex) across Europe. Molecular Ecology 24(17): 4371–4391. http://dx.doi.org/10.1111/mec.13325

Additionally, please cite the Dryad data package:

Hoffmann A, Plötner J, Pruvost NBM, Christiansen DG, Röthlisberger S, Mikulíček P, Choleva L, Cogălniceanu D, Sas-Kovács I, Shabanov D, Morozov-Leonov S, Reyer H (2015) Data from: Genetic diversity and distribution patterns of diploid and polyploid hybrid water frog populations (Pelophylax esculentus complex) across Europe. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.nd1hg
Cite | Share
Download the data package citation in the following formats:
   RIS (compatible with EndNote, Reference Manager, ProCite, RefWorks)
   BibTex (compatible with BibDesk, LaTeX)

Search for data

Be part of Dryad

We encourage organizations to: