Data from: Assessing vertebrate biodiversity in a kelp forest ecosystem using environmental DNA

Port JA, O'Donnell JL, Romero-Maraccini OC, Leary PR, Litvin SY, Nickols KJ, Yamahara KM, Kelly RP

Date Published: December 15, 2015

DOI: http://dx.doi.org/10.5061/dryad.nf578

 

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Title Vert-12S BLAST database (nhr file)
Downloaded 19 times
Description This is one of three data files composing the marine vertebrate 12S mitochondrial BLAST database used in this study. This is the header (nhr) file.
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Title Vert-12S BLAST database (nin file)
Downloaded 20 times
Description This is one of three data files composing the marine vertebrate 12S mitochondrial BLAST database used in this study. This is the index (nin) file.
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Title Vert-12S BLAST database (nsq file)
Downloaded 13 times
Description This is one of three data files composing the marine vertebrate 12S mitochondrial BLAST database used in this study. This is the sequence (nsq) file.
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Title Table of taxon counts by sample
Downloaded 11 times
Description This table lists the number of sequence reads assigned to each taxon by sampling location. The table represents raw output from our bioinformatic pipeline. Secondary data processing steps were performed to generate the final table used for data analysis (see manuscript). The primer tag sequence refers to the unique 6 bp sample identifier at the 5' of the forward and reverse primers.
Download Taxon_count_table_Raw_Hopkins_eDNA2.csv (15.49 Kb)
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When using this data, please cite the original publication:

Port JA, O'Donnell JL, Romero-Maraccini OC, Leary PR, Litvin SY, Nickols KJ, Yamahara KM, Kelly RP (2016) Assessing vertebrate biodiversity in a kelp forest ecosystem using environmental DNA. Molecular Ecology 25(2): 527–541. http://dx.doi.org/10.1111/mec.13481

Additionally, please cite the Dryad data package:

Port JA, O'Donnell JL, Romero-Maraccini OC, Leary PR, Litvin SY, Nickols KJ, Yamahara KM, Kelly RP (2015) Data from: Assessing vertebrate biodiversity in a kelp forest ecosystem using environmental DNA. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.nf578
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