Data from: Allegory of a cave crustacean: systematic and biogeographic reality of Halosbaena (Peracarida: Thermosbaenacea) sought with molecular data at multiple scales

Page TJ, Hughes JM, Real KM, Stevens MI, King RA, Humphreys WF

Date Published: November 3, 2016

DOI: http://dx.doi.org/10.5061/dryad.nh7pg

 

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Title MrBayes files
Downloaded 3 times
Description This is a ZIP file consisting of 10 separate input files for the program MrBayes version 3.2.2 (Ronquist et al. 2012), which creates phylogenetic trees. Each file is for a separate one, two or three gene dataset. See Table 2 of paper for details of datasets and analyses, Table 1 for site codes and Table S1 for full details of specimen numbers.
Download Page et al MarBioD MrBayes files.zip (14.11 Kb)
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Title TCS files
Downloaded 5 times
Description This is a ZIP file consisting of 4 separate input files for the program TCS version 1.21 (Clement et al. 2000), which creates haplotype networks. Each file is for a separate analysis. See Table 2 of paper for details of datasets and analyses, Table 1 for site codes and Table S1 for full details of specimen numbers.
Download Page et al MarBioD TCS files.zip (2.128 Kb)
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Title Mega files
Downloaded 6 times
Description This is a ZIP file consisting of 4 separate input files for the program Mega6 (Tamura et al. 2013), which creates phylogenetic trees. Each file is for a separate single gene dataset. See Table 2 of paper for details of datasets and analyses, Table 1 for site codes and Table S1 for full details of specimen numbers. “Aus” = Australia, “BI” = “Barrow Island”, “Can” = Canary Islands, “CRE” = “Cape Range East, “PH” = Pilbara High, “PL” = Pilbara Low, “Okin” = Okinawa, “TULKI” = Halosbaena tulki, “Xmas” = Christmas Island.
Download Page et al MarBioD Mega files.zip (4.922 Kb)
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Title BEAST file
Downloaded 13 times
Description This is an input file for the program BEAST 2 version 2.1.3 (Bouckaert et al. 2014), which creates phylogenetic trees and time-trees using a 4 gene dataset. See Table 2 of paper for details of datasets and analyses, Table 1 for site codes and Table S1 for full details of specimen numbers.
Download BEAST COI H3 28S 18S.xml (41.51 Kb)
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When using this data, please cite the original publication:

Page TJ, Hughes JM, Real KM, Stevens MI, King RA, Humphreys WF (2016) Allegory of a cave crustacean: systematic and biogeographic reality of Halosbaena (Peracarida: Thermosbaenacea) sought with molecular data at multiple scales. Marine Biodiversity, online in advance of print. http://dx.doi.org/10.1007/s12526-016-0565-3

Additionally, please cite the Dryad data package:

Page TJ, Hughes JM, Real KM, Stevens MI, King RA, Humphreys WF (2016) Data from: Allegory of a cave crustacean: systematic and biogeographic reality of Halosbaena (Peracarida: Thermosbaenacea) sought with molecular data at multiple scales. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.nh7pg
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