Data from: Diversity and population structure of northern switchgrass as revealed through exome capture sequencing

Evans J, Crisovan E, Barry K, Daum C, Jenkins J, Kunde-Ramamoorthy G, Nandety A, Ngan CY, Vaillancourt B, Wei C-L, Schmutz J, Kaeppler SM, Casler MD, Buell CR

Date Published: December 3, 2015

DOI: http://dx.doi.org/10.5061/dryad.nh8ph.2

 

Files in this package

Content in the Dryad Digital Repository is offered "as is." By downloading files, you agree to the Dryad Terms of Service. To the extent possible under law, the authors have waived all copyright and related or neighboring rights to this data. CC0 (opens a new window) Open Data (opens a new window)

Title dendogram.tree
Downloaded 17 times
Download dendogram.tree (33.72 Kb)
Details View File Details
Title Pvirgatum_v1.1_273_gene_exons_updated_ChrUn_representative.gff3
Downloaded 15 times
Download Pvirgatum_v1.1_273_gene_exons_updated_ChrU....gff3 (118.2 Mb)
Details View File Details
Title Pvirgatum_v1.1_273_hardmasked_ChrUn.coord
Downloaded 14 times
Download Pvirgatum_v1.1_273_hardmasked_ChrUn.coord (13.10 Mb)
Details View File Details
Title Pvirgatum_v1.1_273_hardmasked_ChrUn.fasta
Downloaded 14 times
Download Pvirgatum_v1.1_273_hardmasked_ChrUn.fasta.gz (305.8 Mb)
Details View File Details
Title SNIPE_all_plates_matrix_biallelic_only_nomissing.exonic_variant_function
Downloaded 41 times
Download SNIPE_all_plates_matrix_biallelic_only_nom...ction (375.0 Mb)
Details View File Details
Title SNIPE_all_plates_matrix_biallelic_only_nomissing.variant_function
Downloaded 16 times
Download SNIPE_all_plates_matrix_biallelic_only_nom...ction (706.6 Mb)
Details View File Details
Title switchgrass_upland_panel_down_cnv_list.txt
Downloaded 19 times
Download switchgrass_upland_panel_down_cnv_list.txt (1.652 Mb)
Details View File Details
Title switchgrass_upland_panel_up_cnv_list.txt
Downloaded 14 times
Download switchgrass_upland_panel_up_cnv_list.txt (224.6 Kb)
Details View File Details
Title SNIPE_all_plates_matrix_biallelic_only_nomissing.txt
Downloaded 22 times
Download SNIPE_all_plates_matrix_biallelic_only_nom...xt.gz (1.073 Gb)
Details View File Details
Title SNIPE_all_plates_matrix_unfiltered.txt
Downloaded 13 times
Download SNIPE_all_plates_matrix_unfiltered.txt.gz (16.59 Gb)
Details View File Details

When using this data, please cite the original publication:

Evans J, Crisovan E, Barry K, Daum C, Jenkins J, Kunde-Ramamoorthy G, Nandety A, Ngan CY, Vaillancourt B, Wei C-L, Schmutz J, Kaeppler SM, Casler MD, Buell CR (2015) Diversity and population structure of northern switchgrass as revealed through exome capture sequencing. The Plant Journal 84(4): 800–815. http://dx.doi.org/10.1111/tpj.13041

Additionally, please cite the Dryad data package:

Evans J, Crisovan E, Barry K, Daum C, Jenkins J, Kunde-Ramamoorthy G, Nandety A, Ngan CY, Vaillancourt B, Wei C-L, Schmutz J, Kaeppler SM, Casler MD, Buell CR (2015) Data from: Diversity and population structure of northern switchgrass as revealed through exome capture sequencing. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.nh8ph.2
Cite | Share
Download the data package citation in the following formats:
   RIS (compatible with EndNote, Reference Manager, ProCite, RefWorks)
   BibTex (compatible with BibDesk, LaTeX)

Version History

Item Version Date Summary

* Selected Version

Search for data

Be part of Dryad

We encourage organizations to: