Data from: Resolving phylogenetic relationships of the recently radiated carnivorous plant genus Sarracenia using target enrichment

Stephens JD, Rogers WL, Heyduk K, Cruse-Sanders JM, Determann RO, Glenn TC, Malmberg RL

Date Published: March 3, 2015

DOI: http://dx.doi.org/10.5061/dryad.nn153

 

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Title concatenation_RAxML
Downloaded 12 times
Description Concatenation tree for 75 accessions across Sarraceniaceae
Download concatenation_RAxML.tre (1.757 Kb)
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Title concatenation_Sarracenia
Downloaded 11 times
Description Concatenation sequences of 75 accessions used for RAxML analysis in phylip format
Download concatenation_Sarracenia.phylip (9.609 Mb)
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Title Chloroplast_Sarracenia
Downloaded 6 times
Description 42kb of chloroplast for 75 accessions of Sarraceniaceae in phylip format. Was analyzed in RAxML.
Download Chloroplast_Sarracenia.phylip (3.153 Mb)
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Title chloroplast_RAxML
Downloaded 8 times
Description Sarracenia chloroplast tree estimated using RAxML with 75 accessions
Download chloroplast_RAxML.tre (1.768 Kb)
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Title MPEST_199
Downloaded 7 times
Description Sarracenia species tree estimated from 199 genes in MP-EST
Download MPEST_199.nwk (755 bytes)
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Title MPEST_accession
Downloaded 7 times
Description Accession tree estimated using 199 genes in MP-EST
Download MPEST_accession.tre (2.986 Kb)
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Title Sarracenia_fasta_199
Downloaded 77 times
Description Zip file containing the 199 genes in fasta format
Download Sarracenia_fasta_199.zip (356.7 Kb)
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Title genetrees_nwk
Downloaded 69 times
Description The zip file contains all the bootstrap gene files. There are 199 files (one for each gene) with 500 bootstrapped gene trees within each file. These were all estimated from RAxML and used in MP-EST to estimate the species tree.
Download genetrees_nwk.zip (10.29 Mb)
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When using this data, please cite the original publication:

Stephens JD, Rogers WL, Heyduk K, Cruse-Sanders JM, Determann RO, Glenn TC, Malmberg RL (2015) Resolving phylogenetic relationships of the recently radiated carnivorous plant genus Sarracenia using target enrichment. Molecular Phylogenetics and Evolution 85: 76-87. http://dx.doi.org/10.1016/j.ympev.2015.01.015

Additionally, please cite the Dryad data package:

Stephens JD, Rogers WL, Heyduk K, Cruse-Sanders JM, Determann RO, Glenn TC, Malmberg RL (2015) Data from: Resolving phylogenetic relationships of the recently radiated carnivorous plant genus Sarracenia using target enrichment. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.nn153
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