Data from: Genome sequencing and comparative analysis of three Chlamydia pecorum strains associated with different pathogenic outcomes

Sait M, Livingstone M, Clark EM, Wheelhouse N, Spalding L, Markey B, Magnino S, Lainson FA, Myers GSA, Longbottom D

Date Published: January 27, 2014

DOI: http://dx.doi.org/10.5061/dryad.np597

 

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Title Ribosomal phylogeny alignment
Downloaded 11 times
Description MUSCLE alignment of concatenated protein sequences from 48 ribosomal proteins from species of the family Chlamydiaceae. File is in nexus format.
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Title Ribosomal tree file
Downloaded 11 times
Description Maximum-likelihood (PhyML) phylogenetic tree calculated using JTT+G substitution model with the concatenated sequences of 48 ribosomal proteins from species of the family Chlamydiaceae using PhyML. File is in Newick tree file format.
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Title PMP AT domain alignment
Downloaded 14 times
Description MUSCLE alignment of the autotransporter (AT) domain of polymorphic membrane proteins (PMP) originating from Chlamydia species. File is in nexus format.
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Title PMP AT domain tree file
Downloaded 6 times
Description Phylogenetic tree of the autotransporter domain of polymorphic membrane proteins originating from Chlamydia species. Distances were calculated using a JTT+I+G substitution model and trees generated using PhyML. File is in Newick tree file format.
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Title Chlamydial cytotoxins alignment
Downloaded 4 times
Description MUSCLE alignment of chlamydial cytotoxoin proteins. GBlocks v 0.91 was used to eliminate regions that could not be unambiguously aligned resulting in an alignment of 2845 amino acids (75% of the original 3766 positions). File is in nexus format.
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Title Chlamydial cytotoxins tree
Downloaded 10 times
Description Phylogenetic tree of cytotoxins originating from Chlamydia species. Distances were calculated using a WAG+I+G substitution model and trees generated using MrBayes. File is in Newick tree file format.
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When using this data, please cite the original publication:

Sait M, Livingstone M, Clark EM, Wheelhouse N, Spalding L, Markey B, Magnino S, Lainson FA, Myers GSA, Longbottom D (2014) Genome sequencing and comparative analysis of three Chlamydia pecorum strains associated with different pathogenic outcomes. BMC Genomics 15: 23. http://dx.doi.org/10.1186/1471-2164-15-23

Additionally, please cite the Dryad data package:

Sait M, Livingstone M, Clark EM, Wheelhouse N, Spalding L, Markey B, Magnino S, Lainson FA, Myers GSA, Longbottom D (2014) Data from: Genome sequencing and comparative analysis of three Chlamydia pecorum strains associated with different pathogenic outcomes. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.np597
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