Data from: Development and preliminary evaluation of a genome-wide single-nucleotide polymorphisms resource generated by RAD-seq for the small yellow croaker (Larimichthys polyactis)

Zhang B, Xue D, Wang J, Li Y, Liu B, Liu J

Date Published: October 1, 2015

DOI: http://dx.doi.org/10.5061/dryad.nr6bb

 

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Title XHY_small_yellow_croaker_SNP
Downloaded 13 times
Description Single-nucleotide polymorphisms for the small yellow croaker (Larimichthys polyactis) were identified using restriction-site-associated DNA (RAD) sequencing of 24 individuals from two populations in China on an Illumina Hi-Seq 2500 platform.
Download XHY_small_yellow_croaker_SNP.zip (3.086 Mb)
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Title XHY_small_yellow_croaker_reference_sequence_assembly
Downloaded 7 times
Description One small yellow croaker (Larimichthys polyactis) individual from the sampled populations was sequenced with the greatest amount of data (approximately 5 whole-genome coverage for this reference individual)as the reference assembly assembled from pair-end reads sequencing on Illumina Hi-Seq 2500 platform
Download XHY_small_yellow_croaker_sequence_assembly.zip (29.96 Mb)
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Title XHY_small_yellow_croaker_SNP_summary_statistics
Downloaded 20 times
Description Summary information on individual SNP (IDs, allele frequencies, Fst et al) was provided for the small yellow croaker (Larimichthys polyactis)
Download XHY_small_yellow_croaker_SNP_statistics.zip (1.869 Mb)
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Title Admixture_Lositan_input_files
Downloaded 6 times
Description Input files of ADMIXTURE and LOSITAN analysis were provided for the small yellow croaker (Larimichthys polyactis)
Download Admixture_Lositan_input_files.zip (1.469 Mb)
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When using this data, please cite the original publication:

Zhang B, Xue D, Wang J, Li Y, Liu B, Liu J (2015) Development and preliminary evaluation of a genome-wide single-nucleotide polymorphisms resource generated by RAD-seq for the small yellow croaker (Larimichthys polyactis). Molecular Ecology Resources 16(3): 755-768. http://dx.doi.org/10.1111/1755-0998.12476

Additionally, please cite the Dryad data package:

Zhang B, Xue D, Wang J, Li Y, Liu B, Liu J (2015) Data from: Development and preliminary evaluation of a genome-wide single-nucleotide polymorphisms resource generated by RAD-seq for the small yellow croaker (Larimichthys polyactis). Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.nr6bb
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