Data from: De novo assembly and characterization of the skeletal muscle and electric organ transcriptomes of the African weakly-electric fish Campylomormyrus compressirostris (Mormyridae, Teleostei)

Lamanna F, Kirschbaum F, Tiedemann R

Date Published: March 27, 2014

DOI: http://dx.doi.org/10.5061/dryad.ns135

 

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Title C. compressirostris electric organ contigs (Velvet/Oases)
Downloaded 19 times
Description Set of contigs assembled from the electric organ reads using Velvet/Oases.
Download transcripts_EO.fa (90.18 Mb)
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Title C. compressirostris skeletal muscle contigs (Velvet/Oases)
Downloaded 18 times
Description Set of contigs assembled from the skeletaal muscle reads using Velvet/Oases.
Download transcripts_MU.fa (45.34 Mb)
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Title Gene Ontology annotation (electric organ)
Downloaded 13 times
Description List of electric organ contig names with the corresponding annotated GO code.
Download EO_vs_uniprot_sprot_oases.annot (43.87 Mb)
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Title Gene Ontology annotation (skeletal muscle)
Downloaded 11 times
Description List of skeletal muscle contig names with the corresponding annotated GO code.
Download MU_vs_uniprot_sprot_oases.annot (23.14 Mb)
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Title C. compressirostris reads mapping vs C.numenius mt genome.
Downloaded 11 times
Description Result of C. compressirostris transcriptome reads mapping against the mitochondrial genome of C.numenius.
Download AP011571_reads_mapping.bam (250.9 Mb)
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Title Mormyridae mt-genomes alignment.
Downloaded 8 times
Description Alignment of the reconstructed C. compressirostris mt-genome against other mormyrids mt-genomes available from Genbank.
Download mt_genomes_alignment.fasta (359.3 Kb)
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Title Fisher Exact Test
Downloaded 16 times
Description R script used to perform the Fisher's Exact Test with FDR p-value correction.
Download multi_fisher.r (902 bytes)
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When using this data, please cite the original publication:

Lamanna F, Kirschbaum F, Tiedemann R (2014) De novo assembly and characterization of the skeletal muscle and electric organ transcriptomes of the African weakly-electric fish Campylomormyrus compressirostris (Mormyridae, Teleostei). Molecular Ecology Resources 14(6): 1222-1230. http://dx.doi.org/10.1111/1755-0998.12260

Additionally, please cite the Dryad data package:

Lamanna F, Kirschbaum F, Tiedemann R (2014) Data from: De novo assembly and characterization of the skeletal muscle and electric organ transcriptomes of the African weakly-electric fish Campylomormyrus compressirostris (Mormyridae, Teleostei). Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.ns135
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