Data from: Revealing the biochemical and genetic basis of color variation in a polymorphic lizard

McLean CA, Lutz A, Rankin KJ, Stuart-Fox D, Moussalli A

Date Published: April 24, 2017

DOI: http://dx.doi.org/10.5061/dryad.ns315

 

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Title Gene_Differential_Expression_Results
Downloaded 6 times
Description Spreadsheet showing the reletive expression levels of genes (in transcripts per million reads, TPM) in skin and non-skin tissue samples estimated using RSEM and Bowtie 2. Differentially expressed genes between skin colours and skin and non-skin were identified using edgeR.
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Title Genes_More_Highly_Expressed_in_Skin
Downloaded 4 times
Description List of genes more highly expressed in at least one skin colour (blue, grey, yellow, orange) than in non-skin samples. Data are transcripts per million reads (TPM) estimated using RSEM.
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Title RSEM_Reference
Downloaded 2 times
Description Ctenophorus decresii specific reference for downstream mapping (for estimating gene expression) consisting of 19,407 protein coding regions annotated for Pogona vitticeps (the closest con-familial species for which a fully annotated genome is available).
Download decresii_pogona_eo.fasta (26.32 Mb)
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Title EdgeR_Matrix
Downloaded 12 times
Description Gene count matrix for differential expression analysis.
Download EdgeR_Matrix.txt (3.044 Mb)
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Title EdgeR_Script
Downloaded 2 times
Description R script for differential expression analysis using EdgeR.
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Title Assemblies
Downloaded 9 times
Description Trinity assemblies for each transcriptome used in this study.
Download Assemblies.zip (1.078 Gb)
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When using this data, please cite the original publication:

McLean CA, Lutz A, Rankin KJ, Stuart-Fox D, Moussalli A (2017) Revealing the biochemical and genetic basis of color variation in a polymorphic lizard. Molecular Biology and Evolution, online in advance of print. http://dx.doi.org/10.1093/molbev/msx136

Additionally, please cite the Dryad data package:

McLean CA, Lutz A, Rankin KJ, Stuart-Fox D, Moussalli A (2017) Data from: Revealing the biochemical and genetic basis of color variation in a polymorphic lizard. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.ns315
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