Data from: Identification and characterization of sex-associated loci in sockeye salmon using genotyping-by-sequencing and comparison with a sex-determining assay based on the sdY gene

Larson WA, McKinney GJ, Seeb JE, Seeb LW

Date Published: July 11, 2016

DOI: http://dx.doi.org/10.5061/dryad.p15br

 

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Title RAD genotypes at sex-associated loci for Wood River individuals
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Description RAD genotypes at seven sex-associated loci in 286 individuals from the Wood River basin. Some loci contain multiple SNPs (e.g. locus 30453). The position of the SNP in the RAD tag is found after the underscore in the locus designation (e.g designation 30453_92 contains genotypes for a SNP at position 92 in locus 30453). Presence/absence loci do not contain SNPs. Individuals were sampled from six locations in the Wood River basin and each location is designated with a different code in the individuals column.
Download RAD_genotypes_and_sex_for_wood_river_indiv....xlsx (20.95 Kb)
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Title genotype data from 5'-nuclease, sdY, and 18s assays in 8 collections
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Description Genotype data from two 5'-nuclease assays developed from RAD data (61628, 76412), sdY, and 18s assays. If 18s was absent, the genotype for sdY was considered a no call, even if an sdY band was present.
Download 5_prime_nuclease_sdy_and_18s_genotypes_all....xlsx (24.69 Kb)
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When using this data, please cite the original publication:

Larson WA, McKinney GJ, Seeb JE, Seeb LW (2016) Identification and characterization of sex-associated loci in sockeye salmon using genotyping-by-sequencing and comparison with a sex-determining assay based on the sdY gene. Journal of Heredity 107(6): 559-566. http://dx.doi.org/10.1093/jhered/esw043

Additionally, please cite the Dryad data package:

Larson WA, McKinney GJ, Seeb JE, Seeb LW (2016) Data from: Identification and characterization of sex-associated loci in sockeye salmon using genotyping-by-sequencing and comparison with a sex-determining assay based on the sdY gene. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.p15br
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