Data from: Phylum-wide comparative genomics unravel the diversity of secondary metabolism in Cyanobacteria

Calteau A, Fewer DP, Latifi A, Coursin T, Laurent T, Jokela J, Kerfeld CA, Sivonen K, Piel J, Gugger M

Date Published: November 19, 2014

DOI: http://dx.doi.org/10.5061/dryad.p680f

 

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Title SpeciesTree concatenated alignment dataset
Downloaded 47 times
Description The alignment used to generate the species tree corresponds to the concatenation of twenty-nine conserved proteins as described in the material and method section of the paper.
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Title Maximum Likelihood phylogeny tree of all cyanobacteria included in the study
Downloaded 29 times
Description The Maximum-Likelihood phylogenetic species tree was generated using PhyML 3.1.0.2 with the alignment of a concatenation of twenty-nine conserved proteins.
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Title KS PUFA alignment dataset
Downloaded 21 times
Description The alignment used to generate the phylogeny of bacterial ketoacyl synthase domains.
Download KS_PUFA_aln.fasta (170.8 Kb)
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Title Phylogeny of bacterial ketoacyl synthase domains
Downloaded 14 times
Description Maximum likelihood phylogenetic tree of bacterial KS based on gene clusters encoding secondary lipids biosynthesis and enediynes.
Download KS_PUFA_ML.tree (18.47 Kb)
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Title KS domains alignement
Downloaded 19 times
Description Alignment of the 472 KS domains detected in the 452 gene clusters.
Download KSdomains_472_aln.fasta (531.8 Kb)
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Title Maximum-likelihood phylogenetic tree of the 472 KS domains
Downloaded 15 times
Download KSdomains_472_ML.tree (39.35 Kb)
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Title C domains alignement
Downloaded 16 times
Description Alignement of the 939 C domains detected in the 452 gene clusters.
Download allC_domains_939_aln.fasta (881.7 Kb)
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Title Maximum-likelihood phylogenetic tree of the 939 C domains
Downloaded 13 times
Download allC_domains_939_JTT_ML.tree (88.84 Kb)
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When using this data, please cite the original publication:

Calteau A, Fewer DP, Latifi A, Coursin T, Laurent T, Jokela J, Kerfeld CA, Sivonen K, Piel J, Gugger M (2014) Phylum-wide comparative genomics unravel the diversity of secondary metabolism in Cyanobacteria. BMC Genomics 15: 977. http://dx.doi.org/10.1186/1471-2164-15-977

Additionally, please cite the Dryad data package:

Calteau A, Fewer DP, Latifi A, Coursin T, Laurent T, Jokela J, Kerfeld CA, Sivonen K, Piel J, Gugger M (2014) Data from: Phylum-wide comparative genomics unravel the diversity of secondary metabolism in Cyanobacteria. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.p680f
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