Data from: Galega orientalis is more diverse than Galega officinalis in Caucasus – whole-genome AFLP analysis and phylogenetics of symbiosis-related genes

 

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Title Plant AFLP patterns
Downloaded 74 times
Description This file contains the normalized AFLP patterns of the Galega accessions from Caucasus, created with BioNumerics. These patterns functioned as the basis for the curve-based analysis, used to construct the similarity matrix.
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Title Rhizobium AFLP patterns
Downloaded 34 times
Description This file contains the normalized gel picture of the AFLP patterns for the Rhizobium galegae strains representing the R. galegae population in Caucasus. The file was created with BioNumerics and used in the curve-based analysis to construct the similarity matrix of the rhizobial AFLP analysis.
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Title Galega AFLP similarity matrix
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Description The similarity matrix obtained from the BioNumerics analysis of the Galega AFLP data.
Download Galega_AFLP_similarity_matrix.txt (22.11 Kb)
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Title Rhizobium AFLP similarity matrix
Downloaded 30 times
Description The similarity matrix obtained from the BioNumerics analysis of the Rhizobium galegae AFLP data.
Download Rhizobium_AFLP_similarity_matrix.txt (6.657 Kb)
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Title NORK neighbor-joining tree of complete dataset
Downloaded 40 times
Description The neighbor-joining tree used for the codeml analyses of the NORK gene. The tree was constructed in MEGA 4, with the substitution model of Tamura-Nei + gamma 1.0 and complete deletion of gaps. Bootstrap values > 70 % are shown.
Download NORK_NJ_tree_All_Galegas.pdf (7.855 Kb)
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Title Nfr5 neighbor-joining tree of complete dataset
Downloaded 101 times
Description The neighbor-joining tree used for the codeml analyses of the Nfr5 gene. The tree was constructed in MEGA 4, with the substitution model of Tamura-Nei + gamma 1.0 and pairwise deletion of gaps and missing data. Bootstrap values > 70 % are shown.
Download Nfr5_NJ_tree_All_Galegas.pdf (8.167 Kb)
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When using this data, please cite the original publication:

Österman J, Chizhevskaja EP, Andronov EE, Fewer DP, Terefework Z, Roumiantseva ML, Onichtchouk OP, Dresler-Nurmi A, Simarov BV, Dzyubenko NI, Lindstrom K (2011) Galega orientalis is more diverse than Galega officinalis in Caucasus – whole-genome AFLP analysis and phylogenetics of symbiosis-related genes. Molecular Ecology 20(22): 4808-4821. http://dx.doi.org/10.1111/j.1365-294X.2011.05291.x

Additionally, please cite the Dryad data package:

Österman J, Chizhevskaja EP, Andronov EE, Fewer DP, Terefework Z, Roumiantseva ML, Onichtchouk OP, Dresler-Nurmi A, Simarov BV, Dzyubenko NI, Lindstrom K (2011) Data from: Galega orientalis is more diverse than Galega officinalis in Caucasus – whole-genome AFLP analysis and phylogenetics of symbiosis-related genes. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.p72p0
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