Data from: Drosophila simulans: a species with improved resolution in evolve and resequence studies

Barghi N, Tobler R, Nolte V, Schlötterer C

Date Published: May 30, 2017

DOI: http://dx.doi.org/10.5061/dryad.p7c77

 

Files in this package

Content in the Dryad Digital Repository is offered "as is." By downloading files, you agree to the Dryad Terms of Service. To the extent possible under law, the authors have waived all copyright and related or neighboring rights to this data. CC0 (opens a new window) Open Data (opens a new window)

Title Dsim_3reps_F0F60_majorChr_downsampled
Description Sync file of allele coverage for Drosophila simulans SNPs in major chromosome arms (X, 2L, 2R, 3L, 3R). Columns in this sync file correspond to chromosome, position, base, Dsim_A_F0, Dsim_B_F0, Dsim_C_F0, Dsim_A_F60_Hot, Dsim_B_F60_Hot, Dsim_C_F60_Hot. Nomenclature of the samples is as follows: e.g. species_replicate_generation_selection regime. Species: Dsim (Drosophila simulans), replicate: letters (A-Z), generation: F#, # indicating the number of generations, and selection regime: Hot. Format specification of sync file is described in Kofler et al., PoPoolation2: identifying differentiation between populations using sequencing of pooled DNA samples (Pool-Seq). Bioinformatics 2011;27:3435-3436. See main publication for additional information about data processing, SNP calling and filtering.
Download Dsim_baseF60_rep1-3-5_bam.sorted.rmdup.fil....sync (646.2 Mb)
Details View File Details
Title Dmel_3reps_F0F59_majorChr_downsampled
Description Sync file of allele coverage for Drosophila melanogaster SNPs in major chromosome arms (X, 2L, 2R, 3L, 3R). Columns in this sync file correspond to chromosome, position, base, Dmel _A_F0, Dmel _B_F0, Dmel _C_F0, Dmel _A_F59_Hot, Dmel _B_F59_Hot, Dmel _C_F59_Hot. Nomenclature of the samples is as follows: e.g. species_replicate_generation_selection regime. Species: Dmel (Drosophila melanogaster), replicate: letters (A-Z), generation: F#, # indicating the number of generations, and selection regime: Hot. Format specification of sync file is described in Kofler et al., PoPoolation2: identifying differentiation between populations using sequencing of pooled DNA samples (Pool-Seq). Bioinformatics 2011;27:3435-3436. See main publication for additional information about data processing, SNP calling and filtering.
Download Dmel_base_F59_reps_1_4_5_downsampled.mpile....sync (342.6 Mb)
Details View File Details

When using this data, please cite the original publication:

Barghi N, Tobler R, Nolte V, Schlötterer C (2017) Drosophila simulans: A Species with Improved Resolution in Evolve and Resequence Studies. G3: Genes - Genomes - Genetics 7(7): 2337-2343. http://dx.doi.org/10.1534/g3.117.043349

Additionally, please cite the Dryad data package:

Barghi N, Tobler R, Nolte V, Schlötterer C (2017) Data from: Drosophila simulans: a species with improved resolution in evolve and resequence studies. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.p7c77
Cite | Share
Download the data package citation in the following formats:
   RIS (compatible with EndNote, Reference Manager, ProCite, RefWorks)
   BibTex (compatible with BibDesk, LaTeX)

Search for data

Be part of Dryad

We encourage organizations to: