Data from: Introgression and the fate of domesticated genes in a wild mammal population

Feulner PGD, Gratten J, Kijas JW, Visscher PM, Pemberton JM, Slate J

Date Published: May 7, 2013

DOI: http://dx.doi.org/10.5061/dryad.p88q8

 

Files in this package

Content in the Dryad Digital Repository is offered "as is." By downloading files, you agree to the Dryad Terms of Service. To the extent possible under law, the authors have waived all copyright and related or neighboring rights to this data. CC0 (opens a new window) Open Data (opens a new window)

Title 29564HighQualitySNPs
Downloaded 11 times
Description plink map file to extract the high quality SNPs used for analysis from ISGC
Download 29564HighQualitySNPs.map (859.2 Kb)
Details View File Details
Title 11405PrunedSNPs
Downloaded 18 times
Description plink map file for LD pruned marker set
Download 11405PrunedSNPs.map (329.6 Kb)
Details View File Details
Title SOA_OAR2
Downloaded 13 times
Description plink map file of marker set on OAR2 (TYRP1)
Download SOA_OAR2.map (89.75 Kb)
Details View File Details
Title SOA_OAR13
Downloaded 12 times
Description plink map file for marker set on OAR13 (ASIP)
Download SOA_OAR13.map (26.73 Kb)
Details View File Details
Title QMsimScript
Downloaded 17 times
Description QMsim parameter file to simulate genome-wide data with and without admixture
Download QMsimScript.prm (6.181 Kb)
Details View File Details
Title simad50K
Downloaded 22 times
Description simulated genom-wide SNP data under an admixture scenarion (plink ped file)
Download simad50K.ped (40.00 Mb)
Details View File Details
Title simad50K
Downloaded 10 times
Description simulated genom-wide SNP data under an admixture scenarion (plink map file)
Download simad50K.map (1.369 Mb)
Details View File Details
Title simnoad50K
Downloaded 174 times
Description simulated genom-wide SNP data under a no admixture scenarion (plink ped file)
Download simnoad50K.ped (40.00 Mb)
Details View File Details
Title simnoad50K
Downloaded 18 times
Description simulated genom-wide SNP data under a no admixture scenarion (plink map file)
Download simnoad50K.map (1.369 Mb)
Details View File Details
Title sim50Kqc_prune
Downloaded 10 times
Description plink map file for quality filtered and pruned marker set for simulated data sets
Download sim50Kqc_prune.map (295.5 Kb)
Details View File Details
Title plink2fastPHASE
Downloaded 46 times
Description R script for converting from plink (.ped) to fastPHASE (.inp) input format
Download plink2fastPHASE.R (2.757 Kb)
Details View File Details
Title fastPHASE2haplotypes
Downloaded 23 times
Description R script for converting fastPHASE output into a list of phased haplotypes with duplicated IDs
Download fastPHASE2haplotypes.R (3.285 Kb)
Details View File Details
Title HS
Downloaded 24 times
Description R script to calculate haplotype sharing (HS) between Soays and other breeds
Download HS.R (23.33 Kb)
Details View File Details

When using this data, please cite the original publication:

Feulner PGD, Gratten J, Kijas JW, Visscher PM, Pemberton JM, Slate J (2013) Introgression and the fate of domesticated genes in a wild mammal population. Molecular Ecology 22(16): 4210-4221. http://dx.doi.org/10.1111/mec.12378

Additionally, please cite the Dryad data package:

Feulner PGD, Gratten J, Kijas JW, Visscher PM, Pemberton JM, Slate J (2013) Data from: Introgression and the fate of domesticated genes in a wild mammal population. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.p88q8
Cite | Share
Download the data package citation in the following formats:
   RIS (compatible with EndNote, Reference Manager, ProCite, RefWorks)
   BibTex (compatible with BibDesk, LaTeX)

Search for data

Be part of Dryad

We encourage organizations to: