Data from: Species delimitation with gene flow: a methodological comparison and population genomics approach to elucidate cryptic species boundaries in Malaysian Torrent Frogs

Chan KO, Alexander AM, Grismer LL, Su Y, Grismer JL, Quah ESH, Brown RM

Date Published: August 9, 2017

DOI: https://doi.org/10.5061/dryad.p928v

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Title md5mc48p10
Downloaded 7 times
Description STRUCTURE file for sNMF analysis and GENODIVE. Filtered using min. depth = 5; missing data = 50%
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Title md5mc68p.10
Downloaded 4 times
Description STRUCTURE file for sNMF analysis and GENODIVE. Filtered using min. depth = 5; missing data = 30%
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Title md10mc48p.10
Downloaded 5 times
Description STRUCTURE file for sNMF analysis and GENODIVE. Filtered using min. depth = 10; missing data = 50%
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Title md10mc68p.10
Downloaded 3 times
Description STRUCTURE file for sNMF analysis and GENODIVE. Filtered using min. depth = 10; missing data = 30%
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Title 16S.ND1.concatenated.nex
Downloaded 6 times
Description concatenated mitochondrial sequence matrix for MrBayes.
Download Concatenated.mrbayes2.nex (480.1 Kb)
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Title sNMF analysis
Downloaded 17 times
Description Example R script for the sNMF analysis
Download LEA.R (2.983 Kb)
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Title md5mc48_final_noinvariant
Downloaded 3 times
Description SNP input file for maximum likelihood phylogenetic analysis after filtering for invariant and non-binary sites
Download md5mc48_final_noinvariant.phy (1.969 Mb)
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Title md5mc48p.10
Downloaded 6 times
Description Input file for ABBA-BABA analysis. Min depth = 5; missing data = 50%
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Title snapp.7sp
Downloaded 7 times
Description Input file for SNAPP
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When using this data, please cite the original publication:

Chan KO, Alexander AM, Grismer LL, Su Y, Grismer JL, Quah ESH, Brown RM (2017) Species delimitation with gene flow: A methodological comparison and population genomics approach to elucidate cryptic species boundaries in Malaysian Torrent Frogs. Molecular Ecology 26(20): 5435-5450. https://doi.org/10.1111/mec.14296

Additionally, please cite the Dryad data package:

Chan KO, Alexander AM, Grismer LL, Su Y, Grismer JL, Quah ESH, Brown RM (2017) Data from: Species delimitation with gene flow: a methodological comparison and population genomics approach to elucidate cryptic species boundaries in Malaysian Torrent Frogs. Dryad Digital Repository. https://doi.org/10.5061/dryad.p928v
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